RNA id: TU68512


Basic Information

Item Value
RNA id TU68512
length 1581
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G54812
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26822296 ~ 26824929 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCATATTTATGGAAGTCTTGACACTTCCAGTTCACATTCCATTCAAATACAGGAACAAAGGCCAACAGGACAGGTCATAAAGAGTATTGTTGGTAAATTAATCCATAATGTTATTCAGCAGATTCCACTACAGTGGCGCTAGAACAATGTATCTGAGGTCTATGAGAAGTAGGGAGAATGTGTACAAGCCTTCATTTCTAGAATGCAGATGGGTTAAAGTCATCTAAATATTTAGCTAGAAAAAAAAGGTCTGAATCACACAGCATTCAAATAGTAGAAACAGAACATGTTCATCACTCAGGAAACAAACAGGACCATATTAAGGCTTCAATACCATTTCAAAGTGCACAATAAATAGGGCCAGTACACAATTCAGAAAACTGCACCTTTAATCCCTTAGCTTTTCCCAGCAATTTAATGCAGTGTAATGTTGTTATcaggaagaagaaagaaacagtCTCATAAAGCACAAAAGTGCTCACAATGGGATAAGATGTTGGTCACTGAAACCAATGCAGCACAGAAGCACTGTGAATTATTAACTCTGGGTTCAATATCAGTGGACATGACCTGACCTGCTCCCTGTAGGGGAATACAGGGTTAAGTACAGCATACCGATAATCAAACTGCAGAGATAAACCTCAGGTTACACAATAGGTTACCTGCACAGCCTGGGCCTGATTACTAATATTTTCTGACCGAAGACACTAATTTCAACACAAGGGATCAgacattaatgaaaaacatgctGAATGAATCTTTGCCTTTGCATTCTCTTTAATGGTCTTTGTTTGATCACAAAGCTCTTGAGTCTATGTGATAGAGTACTTGAGAAGGAGTGTTGCATTGACCTTACAGTCCATTCAGAGTATAAAGGGATAACGAGCTGCTCTGATCTGCCACTATGACCGTGCCCTCTCCCTTCAGCTGTGTGGGACAAATCCAGTTCACCTTCTCGCCATGGTTGAAGCTGAACTTTGGCTTAAGGTCTCTGTGGTCCTCAGGGGCCTGCGCATGGTCAGCCATACCCTGGCTGGAGCTCTGGTCCGGTTTGGGCGAGTGCACACTTTTGCTTTTCCTCCGCTGGGCACCTTTTGCCCTGCCTTTGCTTTCAGTAGTCTGTCCCATCTCACAGATGTCCCACAACAAGACCTTCCCATCATTCCCACCTGAAACCAGCCAGTAAGGGTGTGTCAGGAAGCTGAGGAAATGGACCTGTGAGGCGCCCTGTGTGTGGGCCTTCAGGACGCCGTGTCGCTCGAACTTGGAGCCCGCCACCCTGAGCAGGTGCACCCTGCTGTCCTCAGCAGCGCAGGCAAAAATGTTGCCACAGGATGCTACAGTGACGCAGTGCGCCAAAGGCGGGTTGAAGAGTCGGCCGGCTGACTGCTGTggctcttcctcttcttctgtGGCTTCCTTCAGGTTGAGCACCCACAGGGGACGAGCCTTCTGCAGACTCCACAGCATCACCTGCAGTGATACAGAGCTTTCAGTCACAATCAAGACCTACAGCCCTGGAGCTAGTGGCCTACAAGCCTTGATGTCTAATACACCTCACCATAACATTATAACTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68500 lncRNA upstream 7804 26810651 ~ 26814492 (+) True G54806
TU68503 lncRNA upstream 11045 26810651 ~ 26811251 (+) False G54806
TU68507 lncRNA upstream 25528 26793537 ~ 26796768 (+) True AMCG00009129
TU68501 lncRNA upstream 29895 26787824 ~ 26792401 (+) False G54806
TU68505 lncRNA upstream 29895 26791573 ~ 26792401 (+) False G54806
TU68536 lncRNA downstream 24293 26849222 ~ 26851003 (+) True G54833
TU68587 lncRNA downstream 157914 26982843 ~ 26984157 (+) True G54880
TU68641 lncRNA downstream 271608 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 285951 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 489026 27313955 ~ 27317157 (+) True G54948
AMCG00009138 mRNA upstream 20447 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009129 mRNA upstream 25529 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009128 mRNA upstream 36506 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009122 mRNA upstream 178825 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009123 mRNA upstream 246854 26565688 ~ 26575442 (+) True AMCG00009123
AMCG00009130 mRNA downstream 5270 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009139 mRNA downstream 73680 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009140 mRNA downstream 144956 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009145 mRNA downstream 170029 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009146 mRNA downstream 212400 27037329 ~ 27058960 (+) True AMCG00009146
TU68288 other upstream 1234686 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1904433 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2005762 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2846390 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5528395 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 788654 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1941525 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2103963 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2278711 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2278711 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile