RNA id: TU68523


Basic Information

Item Value
RNA id TU68523
length 769
RNA type TUCP
GC content 0.46
exon number 5
gene id G54821
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26793541 ~ 26796654 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTCTGCTCCCATCTCTGCATAGCAGTTCATAGTCAGCTTGTTCTGCCActaacaacacaaaatacaaaatacatcatgACTTTTGCAAAGCCAACAAAGTGACAAGCAAAAACTGTGAAGAGTATTCTCAGATactacttttttcccttaattATTCTATACAGAAACCAGAACATTCGAAGGTCACCTGGTACTCTGAGGTGGTCCACAAAGGCGACATCtccttttctgtctttcagaCACTGGAAAGCACCAGAATAATCGTAGTAGGGTTCCTTATGGGAGCGGCTGCAGTCTCCCTGGCATTGGCTGCACAGTTCCGGGGTTTTTGCTCCAGGGACACAACTTCCAGAAAAGAACCTGGCCACAGCTTTCTCCAGGGGCTCATTCTCAATTCCTTCCCATTGAATAAAACCTTCAGACACCAGGGTGCCAATGGGAATGTTCCACCCAGCGGACTTGCCCAGGCCTGTGTGGCAGGACTTCTTGCCTGCCAGTTGCTTGAAAGTGAAACCACTGCCTTTCTTCACCAACGCAACGGCGTAGTAACAAGTGTCTGATTCGACACCGTAGTCCTCCGCTATGATTGGGTGGAGATCGTAGTTTTTAAGACCAGCTTCATATATATCACCACCATCCAGAGTGATTGAATCAGCGTCTCCATTcTTTATTGCCTCTAAGCAGCTTTTGACCGAATCCCTCTTTACACAGAGAAGGGCAGGGACCACTTTATTCACATCATCACATTTCTTCTTCTCGATGTCAG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68489 lncRNA downstream 114953 26678250 ~ 26678588 (-) True G54797
TU68478 lncRNA downstream 143548 26626806 ~ 26649993 (-) True G54792
TU68408 lncRNA downstream 261226 26529239 ~ 26532315 (-) False AMCG00009121
TU68409 lncRNA downstream 261226 26529239 ~ 26532315 (-) True AMCG00009121
TU68375 lncRNA downstream 385677 26407583 ~ 26407864 (-) True G54706
TU68544 lncRNA upstream 52559 26849213 ~ 26852408 (-) True G54841
TU68593 lncRNA upstream 181453 26978107 ~ 26979245 (-) True G54886
TU68620 lncRNA upstream 229885 27026539 ~ 27033024 (-) True G54911
TU68623 lncRNA upstream 236498 27033152 ~ 27034216 (-) True G54914
TU68653 lncRNA upstream 315828 27112482 ~ 27114486 (-) False AMCG00009148
AMCG00009137 mRNA downstream 3910 26788878 ~ 26789631 (-) True AMCG00009137
AMCG00009131 mRNA downstream 5076 26787018 ~ 26788465 (-) True AMCG00009131
AMCG00009127 mRNA downstream 16074 26774549 ~ 26777467 (-) True AMCG00009127
AMCG00009126 mRNA downstream 120302 26655165 ~ 26673239 (-) True AMCG00009126
AMCG00009125 mRNA downstream 158177 26630612 ~ 26635364 (-) True AMCG00009125
AMCG00009136 mRNA upstream 14241 26810895 ~ 26814469 (-) True AMCG00009136
AMCG00009132 mRNA upstream 26872 26823526 ~ 26827014 (-) True AMCG00009132
AMCG00009134 mRNA upstream 38874 26835528 ~ 26839792 (-) True AMCG00009134
AMCG00009135 mRNA upstream 55825 26852479 ~ 26860729 (-) True AMCG00009135
AMCG00009133 mRNA upstream 64604 26861258 ~ 26866165 (-) True AMCG00009133
TU68195 other downstream 1617163 25173677 ~ 25176378 (-) True AMCG00009100
TU68185 other downstream 1637203 25153266 ~ 25156338 (-) True G54544
TU67499 other downstream 4609976 22183088 ~ 22183565 (-) True G54003
TU67292 other downstream 6529456 20200747 ~ 20264085 (-) True G53809
TU67291 other downstream 6529456 20252904 ~ 20264085 (-) False G53809
TU68783 other upstream 816944 27613598 ~ 27618089 (-) True AMCG00009165
TU69243 other upstream 2261630 29058284 ~ 29063030 (-) False AMCG00009215
TU69394 other upstream 2864306 29660960 ~ 29670337 (-) True AMCG00009229
TU69579 other upstream 3453217 30249871 ~ 30254483 (-) True AMCG00009241
TU69693 other upstream 3805925 30602579 ~ 30657612 (-) False AMCG00009265

Expression Profile