RNA id: TU68536


Basic Information

Item Value
RNA id TU68536
length 1782
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G54833
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26849222 ~ 26851003 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtcaggtaaaatattacaattgtaaGCCAAgttgtataaaaaaaactgttttacagATATGAACACCGACACGTGTTTGGTCCCTAAATGCACGCGCACACGCAGACACACTTGCACCctcgcacactgacacacacaagcacacacacacggacagagAGGTCTATTCAAATCCCTATTGTCTTGCTATTTACAGAGAAAGCAGTTACTACGAGCAGCCTGCATTAATCATCAGAGGGTATTTTCATACGCATTGCTTTCTTTCAAAAGCAAGTATAGTTTGCCATTTCTGCTGTGCACTTAACCCATAAATGCAATACTTTTATGAAAGGATCAGTTTGCTTATTGCAGCTAGTCGGGGCGGGGAGGGATAAAGTTTCCCTTAAACAAATTACAGGGCATAAACATTCATGTTAATGTATGATTATAAAAGTATAACAACAATCCTGATATGTACAATCGATCTCCTTAGTGCATCTATTCaaccaaaactaaataaaacaaaatgggaaataaatcaaGATAATTTAGTAGATGCACATGTCTGACATAGTGCTTCAGAATAATTGCTTAAAGAGAATTCTCTTATTTAAACACAAGAAACATGACTAATATTCTATGTTCCTGCTGGGGATTAAGAACATTACTGCATGGAAATAACATTATCGTCTTGCACTATTGTATTGGCCCACAAGCATGATGAAAAAACGGACTTCATGGTGAGCCTGCACGCACCACACCAACGCTTGTCCTTGTACCTTGTCATAGACAATTCCAGAAGGTAATCCCACACACTAGGACTGCTGATCTCACAGTGGGACAGCACACTGCATCCTTGCATTAAGCAACGGGGTGGCAAAACAAAGTACTGCCCTTACTGATATAGTGCCAGTCACAAAACATAAGGTATTTTAAAgccaggaaaaaacaaaatgacccGATCATAAGAGGGTATGTTTATACTATCTGTGGCAGCCTTATCATCTGTGTATATAGTGTTGGTTGGCTGTGCAACCAGTACAGTCCTAGAGCTACCATGTGCTGTCATCTTATGTACAGCTTGCATGAGAAGAATACTGCGGTTTTGGGAGTGTGAATGGTGATCACGGCAATACATTACTGCTTGAAATTGATAACCTTCTAGCATCTGTGTTCAGTAATTAAAACCTTACAGAAaaaacagaggaagaaaaataatctctttTCAGGATGCACTGCTGTGTTTAAACATTCTTATCCAATTCATTGTCATTGAATCGCCTATAACTGGAGGAGAATCAAAAACTCATACAAATggaagtttaataaaaaaaacactaaaataccACACTGAATAATTGTTAGAAGAGGAGCACTTTGAATTGGGAGTCCCAGTGGAAATGCAGATCCCAGGGACAGGAATAAGAATGAAGCAGATTGGCTCCTTAAAGAGCTACAGTAATATTCCCCATGGAATAAATGTCCCTAACGAGCTAAACAAAGTACTGACTCACGTGAGGGTGACATGTTTACAACAATGGGAAACCAAGACCTTATAAGGAAGCTGATGCTGAAGGGGAAGTTAAAACGATCGGGTGACCAAGTCAACGCAAGCAGCTCGACACTCTTCCAAAATCACAGCCCAGGACCACAGGGCCAGTGAGACTACACCCCGAGATTCACACATGACCAGGACCACACTGACGGGGCTTTGGTTACTTACCAcatgtgattattattcatattttcaatacAATGCACTTACCAAAATTAACGATCAAAAGGCTAAGGTGGTATCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68512 lncRNA upstream 24293 26822296 ~ 26824929 (+) True G54812
TU68500 lncRNA upstream 34730 26810651 ~ 26814492 (+) True G54806
TU68503 lncRNA upstream 37971 26810651 ~ 26811251 (+) False G54806
TU68507 lncRNA upstream 52454 26793537 ~ 26796768 (+) True AMCG00009129
TU68501 lncRNA upstream 56821 26787824 ~ 26792401 (+) False G54806
TU68587 lncRNA downstream 131840 26982843 ~ 26984157 (+) True G54880
TU68641 lncRNA downstream 245534 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 259877 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 462952 27313955 ~ 27317157 (+) True G54948
TU68662 lncRNA downstream 468765 27319768 ~ 27319971 (+) True G54949
AMCG00009130 mRNA upstream 12805 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009138 mRNA upstream 47373 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009129 mRNA upstream 52455 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009128 mRNA upstream 63432 26782537 ~ 26785790 (+) True AMCG00009128
AMCG00009122 mRNA upstream 205751 26636487 ~ 26643471 (+) True AMCG00009122
AMCG00009139 mRNA downstream 47606 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009140 mRNA downstream 118882 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009145 mRNA downstream 143955 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009146 mRNA downstream 186326 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009144 mRNA downstream 226811 27077814 ~ 27087858 (+) True AMCG00009144
TU68288 other upstream 1261612 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 1931359 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2032688 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 2873316 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5555321 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 762580 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1915451 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 2077889 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2252637 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2252637 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile