RNA id: TU68587


Basic Information

Item Value
RNA id TU68587
length 1315
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G54880
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26982843 ~ 26984157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ataatagtaacaaccttgctttaaaacaataactatcacatttaaaatgcaaaaacataattttgatatttttacctGTGATTTTTATGAGTAGGAAGTGTTTTGTTAATCTGTATGGTTCATAGAATGGTCTGTGGAAATCCCAAAGATTCAAGTGGTCTATTAACCAACATGTTTAAGAGCCATTGTTATAAGGGTTTCATTAAGAGTCAGAGGTGACTGTGCTTTTGACAGACAATATTTCTATATGCATGGTAGtgcatacaaaacatttcaatgagATCTGGACTACCCTTCAGCATAAGAGCTGACACCCTCGAGGTCTGTTCTTGTGTCATCAAAGTGTTCCTGTccaaatagaaataataatgcagaaataaaaccaAGAACATAAATGATGGTCAAAGGGGTGTCAAGCTAAAAACTAAGCAGAGACTGTCCATACTTCACGCATAACACAATTTGGCtttaaataataactttattaatataaaaaatagggATTGTGCTTGTTAGCGTGTATCACAATACGGAGAAGCATTATGCTTTGGCTACTTATTGTAGAGGGGTATACAATTATGTACAATGCAACTCGgcaaaatattcaaaacattgtaCGGACAATGTATGGCACAGTGCACTGGAAAAGTGAGCATTTAGAACAAAGGAGGGTCTTCTGGTAGGATTTTAGGATGGTGTGTAGTGTTAATGCAGTGATTATAGCTTATGGGTTGCTaggcagagagtgagagactACAGGTGTAGCAGGATTTGTGCAGAGATTGGTACCCACTGTAAAGTCTGACAACAGAAGCAAAGTAGAGAAAATGCTATGTGAACACTAAATATCCCAAACACTGTTAAATGTTAATAGAACTGGATAGATATTGAGCACAGAAAGCGGAATTAAGAAATACAAAGAGGAAAATGCACTGAGCAAGTTAGAATGAACATGTACATGATTCTTTTATAAGGTTCCCCAgatgaaaaacatgaacaaaacattttctttagctttaaatcaataacacagTTTAGATCTTAAGTCTTTGTGTATACAGCATACTTGTGTAAAATATATCTAAAGTTATATGATGTgtatacacaaaatattgtatgtaaattactttaaagGTGTCTGCTTAACCTCTACaacaacactactactacttctgaaaaataatactaGAGATTCCATTCCTTTGACCTGTCTGTGTAGGACAATTATGTAAGACCAGGAAACAAACTTCCTTAGCACTGATTCCCCAGCAGCCATTTGTATAACTTTGTGTCAACTGTATAAAATATTCTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68536 lncRNA upstream 131840 26849222 ~ 26851003 (+) True G54833
TU68512 lncRNA upstream 157914 26822296 ~ 26824929 (+) True G54812
TU68500 lncRNA upstream 168351 26810651 ~ 26814492 (+) True G54806
TU68503 lncRNA upstream 171592 26810651 ~ 26811251 (+) False G54806
TU68507 lncRNA upstream 186075 26793537 ~ 26796768 (+) True AMCG00009129
TU68641 lncRNA downstream 112380 27096537 ~ 27096773 (+) True G54928
TU68649 lncRNA downstream 126723 27110880 ~ 27117923 (+) True G54936
TU68661 lncRNA downstream 329798 27313955 ~ 27317157 (+) True G54948
TU68662 lncRNA downstream 335611 27319768 ~ 27319971 (+) True G54949
TU68663 lncRNA downstream 337792 27321949 ~ 27322190 (+) True G54950
AMCG00009140 mRNA upstream 992 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009139 mRNA upstream 79571 26898609 ~ 26903272 (+) True AMCG00009139
AMCG00009130 mRNA upstream 146426 26830199 ~ 26836417 (+) True AMCG00009130
AMCG00009138 mRNA upstream 180994 26801474 ~ 26801849 (+) True AMCG00009138
AMCG00009129 mRNA upstream 186076 26794190 ~ 26796767 (+) False AMCG00009129
AMCG00009145 mRNA downstream 10801 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009146 mRNA downstream 53172 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009144 mRNA downstream 93657 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009147 mRNA downstream 118339 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009150 mRNA downstream 380148 27364305 ~ 27377706 (+) True AMCG00009150
TU68288 other upstream 1395233 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2064980 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2166309 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3006937 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 5688942 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 629426 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1782297 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1944735 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 2119483 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 2119483 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile