RNA id: TU68661


Basic Information

Item Value
RNA id TU68661
length 3203
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G54948
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27313955 ~ 27317157 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagcggcTGGACAGTGAGTTAGCATCCTTAATGAAGCCCACCTTGTTGAGAGCCTACAAGCAGTATAGACAGAGCAAAGGTAAACATCTCTAAATGTGGGTCACCAGGGTTAAGTTCAAGTtgacaggtgtgtgtgagtgtaaatTATAGAGTGTGATGGGAGGGTGAGGCAGATTGTGCTGGATGGACGGGGAATGGGATAGAGTGAGGGAAGaggagtgagagtgtgtgcagTAGTGAGACAGGTAGGCCGATGGGGTGCAGGTTCGTGTCACAAATGCCTTCTCCCCAGGCAGACCAGAGCAGGCAGCTTTTGGAAACGTTTTGACTTCATttgcaagttttattttatttttctcctcacattcaataaatacaaaaaaagaaaactaattattattcataataataataataataataataataataataataattataaaaataataacaataacaataatacaaataaaaaaaatacaataataagacagaaaatgttgctgaaaaaatacagaaatgaaagGAACCTGGCACACACTAGTTTGTAGGGACCCTGCAATGCCATGCTCTGACCCTGTGCAAACAGAGTCCAGCGTACCTTAGAGAGAGAGTAGGATTGACTGGATCCGGAGGGCAGCTCATGacaatttccatttaaaacccTTACAATTACCCAGCTACATGTCTAACCCGCTTTAAATGAAACCCACTCATGACACATGATTCAGAGGGATGAATACTTTGATCGAGGCACAGAGTGACCTACGCGCAGTGGCCTTTAACTGGACAGATGTGCACCAAAAGTCAAAGCAAACCTGGTGATCTAGTGTCCATGTTTGCCCCTGTAGTTGAGCTGCTCTACAAAGACCCTGCATTGTCTCCAAACCAGATACACCCCCCACTCACACTATACAGGTGGTCTACCAGTCCCCATGGCAACAGGATCCCTGGCTGTTTACAGCACAGCATGGGCATCCTTTTACTGCAACACAAAGACCACCACCAGTTCTGCGGACCCCACTGGGGAAATGGGGAAGAAAGAGGAGGGGCATCAAAAAGGACCCACTGTCACTCTTTTCTCTGCAGCAGGCCAGTAACACAATGCATATGAaaggcagcacacacacacacacacacacacacatatttacaaatCCATCCTGTGTGTGTACAAATCTGTCAAATCCATTaccccccccacatacacacccGCCTCCAGCCCTGCTCTCTTTTACTCTCACTCCTCTGCCCTCCTGGATGTCCAGTCATTTCCTCTTCCCTTTGCAGGGGATCCCTGGGGTGGGATGGCTAAAGCAAAGCCCCCCTGTACACTGTGCTGGGAGACTGATCAGCCTGGCTCTGCAGAGCAGGTGTCTGAAGATGGTTTGAAGGTTATATGGCGTGTGGTTTACAACATACAAGAAGCTGTCCTTCCCATAATGGGTCCCAGTCTGCTTTCATGCACAGAAATATCCTGACGTCTGTGCGAGAAATAgcctttacttttttgttttactaaaaaGTTCCCATGAATAAAAAATAGTACAAAGACGGACATCCAAACCGTATGGAAAATAGTTTTTGGTTTACCCTGTACCTCTTGTTTTAAAAGAGAGAGTAGAGGAAGCTAAACCTAAATGGCTCACAGAGTTGCGTTTAAAGACTGTCAGTTCAGCTGCTTTGTACATTAGCACCACAATAACACTGACAATCATTAAGGCTCATTTGCACTTCAACAGATCCCCTTTATTATACCATTTTAAGATCCTTTAAAGAACTCTGTGGCTTTAATAAAAGTCTATGTAAAACAGAATGGGAATCTTTGTGGTTTAACACAAAGATTATAGCTAAGTGGGGGTTTAGGTACAATTCACTTAACGTTAACTCAAGTGTTCATTCATTTGATTACTGAGAAACTGAGGGCAAACCTGAACACCTTTTCTGCCATGATAGGGGAAGAATCCAGGCATTGTTAGGATAGACAATAAATCCCCCATCATCCCCTCAGTTCGGTCTCTTTATGCAATTTCCATTCTCAGAAAAATGTTAAAGGAAATACCTTGAATCACAATGGACCAGATTTTCCTTGTCTGAGGTCATGGAGAAAAATTATGTGATTGCTTGACCAAAACATTCCCATATCAGATTTGGGTGGTCTTTCCTCTGTATGTGTACTCTGCTTTGCCCCCAAAACTGGCCCTGCCCCCAGTACCCAAACAGAGGCACCCAGTGAATCACAGCCGTCCGCAGAAAAGAGGTCTTTCCCAGCTGTAGAGCAAGAAAACAGCCGGGCAGAACTTCCTTTGAAGGGTCCCAGCATCAAAACCTGTCTGTAGGGGATGGTTTAAGCAATAGGCACACTAAGCATGCTTGGCTCATTCAAAACCACATTATAAGAGGGGAACTGTGCTGATCCCACGCTTCCCAAGTGGAGCCAAATGAGCCAGGCTAAGTTATCCGAGCTGAATATTTGCAGTGGGCTGGCAGGGAGTCTTTCACAGCAGTGGGACAGGTTTTCAATCCACTCCTCTGTCATTGCTGGAAACAATTCCCAGAGCATTGATTTTCGGGACTTGAATTGTAAAGAATGTACATTTCCTGGGATGTCTTTCAGCCAGGCGTTCAAAGGAAGACATGTTGATACTGGACATCAAGGTGACAGCAGGCAGGAGTTGGATGTTTTAAGAAGTGATGGGTGGTAGAAACCgttgatgaaaatgttttttggtcatTAAATTAGAAGATGCAGATAGGAAGGcagttgtctgtctgtgtgcaggtggTAGGTGACACCCGCAGTCTTCAGAgtcaaagttaaataaaataacataaaaaggcaaggaaattaaaaaagaattaAAGCAATAGGTATTGTCCTCCTTCTTATGTGCAGTATGCAGAGTATAAATTCCCTCCCGTGTCCAAAGCACATATTTCATTGGTGTCTTACAAGTTCCCTCTTTGCCGTTCTGGTgctttctccccccccccctctctctctctctctctctctatctttcaCTCTGCTTTGTTTCATTACAAATCCAAAGTGTGAGTGTGGGGAGCAGGCCAGCGTGCAGTCTGTGGCCAATCCTGGGTGAAAGACAGCAGGGGACCTCAGGGTGGTTAATATCTCCAGTTGCGCTTCTTCTCGGGCGATTTCAGTGGCTCCTCATCTTCCTTTGAGTTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68649 lncRNA upstream 196032 27110880 ~ 27117923 (+) True G54936
TU68641 lncRNA upstream 217182 27096537 ~ 27096773 (+) True G54928
TU68587 lncRNA upstream 329798 26982843 ~ 26984157 (+) True G54880
TU68536 lncRNA upstream 462952 26849222 ~ 26851003 (+) True G54833
TU68512 lncRNA upstream 489026 26822296 ~ 26824929 (+) True G54812
TU68662 lncRNA downstream 2611 27319768 ~ 27319971 (+) True G54949
TU68663 lncRNA downstream 4792 27321949 ~ 27322190 (+) True G54950
TU68664 lncRNA downstream 5383 27322540 ~ 27322795 (+) True G54951
TU68684 lncRNA downstream 103372 27420529 ~ 27422675 (+) True G54969
TU68713 lncRNA downstream 208910 27526067 ~ 27527494 (+) True G54997
AMCG00009147 mRNA upstream 209064 27102496 ~ 27104891 (+) True AMCG00009147
AMCG00009144 mRNA upstream 226097 27077814 ~ 27087858 (+) True AMCG00009144
AMCG00009146 mRNA upstream 254995 27037329 ~ 27058960 (+) True AMCG00009146
AMCG00009145 mRNA upstream 280998 26994958 ~ 27032957 (+) True AMCG00009145
AMCG00009140 mRNA upstream 332104 26969885 ~ 26981851 (+) True AMCG00009140
AMCG00009150 mRNA downstream 47148 27364305 ~ 27377706 (+) True AMCG00009150
AMCG00009154 mRNA downstream 67611 27384768 ~ 27389302 (+) True AMCG00009154
AMCG00009153 mRNA downstream 86131 27403288 ~ 27416448 (+) True AMCG00009153
AMCG00009152 mRNA downstream 144073 27461230 ~ 27477658 (+) True AMCG00009152
AMCG00009162 mRNA downstream 176244 27493401 ~ 27494525 (+) True AMCG00009162
TU68288 other upstream 1726345 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 2396092 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 2497421 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 3338049 23883317 ~ 23975906 (+) True G54263
TU67408 other upstream 6020054 21292241 ~ 21293901 (+) True G53917
TU68775 other downstream 296426 27613583 ~ 27617378 (+) False AMCG00009164
TU69158 other downstream 1449297 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 1611735 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 1786483 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 1786483 29103640 ~ 29106908 (+) False AMCG00009208

Expression Profile