RNA id: TU68977



Basic Information


Item Value
RNA id TU68977
length 320
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G55204
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28380980 ~ 28381299 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


acatgttaataCCAGCAGATGGCTGTAAGAAACTATTGTCCATTCCTCATAAGGTATCCAGTCTACCTGTACACACTGTTCCCCCCCCAGTGCTGACTGTCTGGtctatgctgtgtgtgtgcgtctgggTGGTAGGAGGCCAGATATACGAGGAAGAGCTGTGCGGCAACAAAGTGTAGACATTTAGAAAGCCAGTTTCTTCATGAGCAGGTACACCCGTGAGTCCACCTCGAACCCGTGCAGATTGTTGGCATCACCCTGAAGTCGCATCAACAGACCTCCATAGGACACATAAGCAGagctgggaggagagagaggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68976 lncRNA upstream 225 28380392 ~ 28380755 (+) True G55203
TU68975 lncRNA upstream 610 28379515 ~ 28380370 (+) True G55202
TU68950 lncRNA upstream 55321 28325359 ~ 28325659 (+) True G55184
TU68786 lncRNA upstream 754969 27623516 ~ 27626011 (+) True AMCG00009164
TU68713 lncRNA upstream 853486 27526067 ~ 27527494 (+) True G54997
TU68978 lncRNA downstream 1701 28383000 ~ 28383503 (+) True G55205
TU69038 lncRNA downstream 83263 28464562 ~ 28465226 (+) True G55257
TU69101 lncRNA downstream 246364 28627663 ~ 28630297 (+) True G55300
TU69110 lncRNA downstream 251056 28632355 ~ 28633332 (+) True G55308
TU69185 lncRNA downstream 516677 28897976 ~ 28898693 (+) True G55357
AMCG00009176 mRNA upstream 258948 28101690 ~ 28122032 (+) True AMCG00009176
AMCG00009175 mRNA upstream 520854 27842533 ~ 27860126 (+) True AMCG00009175
AMCG00009173 mRNA upstream 612813 27757223 ~ 27768167 (+) True AMCG00009173
AMCG00009169 mRNA upstream 647170 27732555 ~ 27733810 (+) True AMCG00009169
AMCG00009170 mRNA upstream 684316 27687885 ~ 27696664 (+) True AMCG00009170
AMCG00009177 mRNA downstream 4307 28385606 ~ 28387362 (+) True AMCG00009177
AMCG00009181 mRNA downstream 22824 28404123 ~ 28405444 (+) True AMCG00009181
AMCG00009180 mRNA downstream 71451 28452750 ~ 28460154 (+) True AMCG00009180
AMCG00009188 mRNA downstream 107757 28489056 ~ 28505796 (+) True AMCG00009188
AMCG00009189 mRNA downstream 129264 28510563 ~ 28515851 (+) True AMCG00009189
TU68775 other upstream 763602 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 2793370 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3463117 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3564446 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4405074 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 385155 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 547593 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 722341 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 722341 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 791840 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile