RNA id: TU69038



Basic Information


Item Value
RNA id TU69038
length 388
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G55257
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28464562 ~ 28465226 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCCTACTTCGTGGTAATGTATACCAAATCAAAAAGTTTTTAGAAAGAAAGCAGCACTCACATATTCCTCCTCTAGGTTAAGCAGGTGGTCAATGGCTTCATCCACATGCTCAGGGAGCCCAGTGACAGTCACAACATCAGGGTcagctgctccagtctggggaAATCTTAGGTCCACCTGAATTCATCCATGATCTTGCGGATGCCTTTGCCACGAGCTCCGATGATGCGGGCATGAACACGGTGGTCCAGGGTGATGTCCTCCGAAATCATCTCCTCCAGCTCGTCCACAATGCGCTGGATAGCGTCACGGGCTGCCTCAGTGTTGCGCTCATACCCAGTGATTGTGATCTGATCCTGCAGGGCAGAATGAAACTTTATACCACCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU68978 lncRNA upstream 81059 28383000 ~ 28383503 (+) True G55205
TU68977 lncRNA upstream 83263 28380980 ~ 28381299 (+) True G55204
TU68976 lncRNA upstream 83807 28380392 ~ 28380755 (+) True G55203
TU68975 lncRNA upstream 84192 28379515 ~ 28380370 (+) True G55202
TU68950 lncRNA upstream 138903 28325359 ~ 28325659 (+) True G55184
TU69101 lncRNA downstream 162437 28627663 ~ 28630297 (+) True G55300
TU69110 lncRNA downstream 167129 28632355 ~ 28633332 (+) True G55308
TU69185 lncRNA downstream 432750 28897976 ~ 28898693 (+) True G55357
TU69229 lncRNA downstream 564092 29029318 ~ 29031478 (+) True G55394
TU69310 lncRNA downstream 719695 29184921 ~ 29185184 (+) True G55461
AMCG00009180 mRNA upstream 4408 28452750 ~ 28460154 (+) True AMCG00009180
AMCG00009181 mRNA upstream 59118 28404123 ~ 28405444 (+) True AMCG00009181
AMCG00009177 mRNA upstream 77200 28385606 ~ 28387362 (+) True AMCG00009177
AMCG00009176 mRNA upstream 342530 28101690 ~ 28122032 (+) True AMCG00009176
AMCG00009175 mRNA upstream 604436 27842533 ~ 27860126 (+) True AMCG00009175
AMCG00009188 mRNA downstream 23830 28489056 ~ 28505796 (+) True AMCG00009188
AMCG00009189 mRNA downstream 45337 28510563 ~ 28515851 (+) True AMCG00009189
AMCG00009190 mRNA downstream 79102 28544328 ~ 28564108 (+) True AMCG00009190
AMCG00009192 mRNA downstream 127921 28593147 ~ 28596450 (+) True AMCG00009192
AMCG00009187 mRNA downstream 134692 28599918 ~ 28610586 (+) True AMCG00009187
TU68775 other upstream 847184 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 2876952 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 3546699 24915029 ~ 24917863 (+) False AMCG00009088
TU68049 other upstream 3648028 24812618 ~ 24816534 (+) True AMCG00009085
TU67814 other upstream 4488656 23883317 ~ 23975906 (+) True G54263
TU69158 other downstream 301228 28766454 ~ 28777621 (+) False AMCG00009204
TU69199 other downstream 463666 28928892 ~ 29011768 (+) True AMCG00009207
TU69266 other downstream 638414 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 638414 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 707913 29173139 ~ 29174700 (+) True AMCG00009220

Expression Profile