RNA id: TU69229


Basic Information

Item Value
RNA id TU69229
length 1943
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G55394
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29029318 ~ 29031478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attttgtttttagactTTATTTTCAGAGAACAGCATTTATAATTACAAAAGTATGAAACAACGGACAACCtgtaagcaaaacaaataatcacaTTTCTACTTCCAAAAGTAAATTGTCTGCAACCTGCACAGAACGTTTGTAAGCTTCCACTCTTGTCAACTTCTCAGTCTTCTGCAGAAATCAAGAGCAAACATGCCTCCTCGCCTTTATCAAAGAAATATACTCTATTAGCAAACAGCGGACAGTTTTTACCTGGGTTGGTAGTACCTCATCTCCACAGAAAGTCACAGTAGTGAGATTTTCAGgcaaaaaataattgttgcGATATAGCAAGCTTTCGTATACCTGGAGCTGGTTTTCAGAAGATGTATGTGAATGGATCTGAGCATCAGAAAAGTGaatcttacaaaacataaatgaaacCTACAAAACAGCAACTGTGAAGTGTCTTTCAAAGTGctataatatacatttgattGTCCCCCCAAAATACCTTCACTTTGCAatgtaacaataaattaatgggATTGCAGTCGAGCGTGCAGCAGTACAGAACTGCCTTCAAATTGGTGGAAATGACATAGTATGTATTTACCTTGACACTGAAATTCACACACTTACAGGGATGGATGTACAGGTTACTTTTTACATTATGACTGCCAACCACTTGAAGAAAGAATAACTTGTGCCAAGACACCAAGAACAGTAGCAGGGTCCCTCTCCATAAGGTAGAAATattgtttgattgtgttttgtttctccagGATTCATATTAGAATTAAAGACTAGTGCTGGGgcaataactgaaataaattgaaacaaaataaaacttttgaTCTGTATTGATTTTGCTGAACATCTGGCTGAAAACATCATGAAGTTACTTCAGTACTAAAGATGTACATTCCCTACAGTTACTTAAATACACATTCTTATGATACCTTACATAACATCGCTTTTCCCTTTTACAGTCTGTAATTGAAAATGGCATCTTCAGAAGTGCCTTTTTTTAGTAAACAGATTTTGTAATAACTACAACTAGATTATGATGTTTATATAGTAAGTATACACATGTAATTATATgaaatttgttattgtttttaatgattaattcaCTTTTTGTATAGATTGATGTTCGATaccttgttttgcatttattacaGACTCATAACTTGATATTGAAACTAGAGAAATAGCAAGTAATACATAGTCACTGAGGATTTGGTGTCTATGTCTTGCTGTGGCAGGGTCCAATTTTACTAACAGTAGGAAGAGGCCTGGTGAGATGTCTTAGGTCTTATGATATTTTGATATAGTCTTTTCATTCTATTCAGTCCAGTCTTTGGAGTTGCATATGGAGTCCATATTAATTTACTGTTCCCAGAAGAGAAAGCAGCCGTTAACCTTGACCAAGCCTGAACAACAGAGCTCACTTAACTGAACGTCCCTTCTTTGACACTTGAACCGCTTCTTGATTCACTTGGAAACTGTCTGGGTGGGTCTTAAAAGGCCATCTACACGAGGCCTGCCTTTGCTGGGCAGCTCTGAGCTCTCTCGGTAGTCCCTTGGTTTGGTGGGGGGAGGATCAGGACGTGACTTAGCTGGAAGGGAAGGGGGAATCTTTGGCAGTATGCCGCAATCAGAACGGGATGGTACCACCGGTTTCTTAAGGCCAGGAGGCTGAAGGTTGCAGGGAGGCTTTGTCTCCGAGTAGGTAAAAGAGCGGTTCCGGGGGGTGGGCACAGGAGGTGGGCGTTCTCCTTCCACCTCCAGGATCTTTGGGAAGGGAAAGAAAGCATCTTGGGGTGTTAGCTGATCCTTGCGGTTGGGCCGCTGGGAGTCCTGCTCCTTGCGGCCTGATAACTTTGGCATTTCCCTGGATCCATACAGAGGATTGTCAAACATCTCTGGGGGTCTCCCATCCTCTGACCTGCAGGGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69185 lncRNA upstream 130625 28897976 ~ 28898693 (+) True G55357
TU69110 lncRNA upstream 395986 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 399021 28627663 ~ 28630297 (+) True G55300
TU69038 lncRNA upstream 564092 28464562 ~ 28465226 (+) True G55257
TU68978 lncRNA upstream 645815 28383000 ~ 28383503 (+) True G55205
TU69310 lncRNA downstream 153443 29184921 ~ 29185184 (+) True G55461
TU69312 lncRNA downstream 155216 29186694 ~ 29187955 (+) True G55463
TU69342 lncRNA downstream 426943 29458421 ~ 29458743 (+) True G55487
TU69374 lncRNA downstream 610011 29641489 ~ 29641936 (+) True G55512
TU69445 lncRNA downstream 826817 29858295 ~ 29932152 (+) False G55564
AMCG00009202 mRNA upstream 9426 29014392 ~ 29019892 (+) True AMCG00009202
AMCG00009207 mRNA upstream 44998 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009206 mRNA upstream 102490 28910313 ~ 28926828 (+) True AMCG00009206
AMCG00009203 mRNA upstream 136274 28867586 ~ 28893044 (+) True AMCG00009203
AMCG00009205 mRNA upstream 192906 28802969 ~ 28836412 (+) True AMCG00009205
AMCG00009214 mRNA downstream 43603 29075081 ~ 29102077 (+) True AMCG00009214
AMCG00009208 mRNA downstream 72130 29103608 ~ 29108227 (+) False AMCG00009208
AMCG00009220 mRNA downstream 139845 29171323 ~ 29174731 (+) False AMCG00009220
AMCG00009221 mRNA downstream 277378 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009218 mRNA downstream 335160 29366638 ~ 29402226 (+) True AMCG00009218
TU69199 other upstream 17550 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 251697 28766454 ~ 28777621 (+) False AMCG00009204
TU68775 other upstream 1411940 27613583 ~ 27617378 (+) False AMCG00009164
TU68288 other upstream 3441708 25584892 ~ 25587610 (+) False AMCG00009108
TU68059 other upstream 4111455 24915029 ~ 24917863 (+) False AMCG00009088
TU69266 other downstream 72162 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other downstream 72162 29103640 ~ 29106908 (+) False AMCG00009208
TU69299 other downstream 141661 29173139 ~ 29174700 (+) True AMCG00009220
TU69455 other downstream 876433 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 963648 29995126 ~ 29995438 (+) True G55591

Expression Profile