RNA id: TU69312



Basic Information


Item Value
RNA id TU69312
length 1238
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G55463
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29186694 ~ 29187955 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tacatagaaattcaatacttttattttacattcatacatctatattttacaatataagcTTAATGCAGTTTAAAGAAGCCCAACCCCAAATATTTCCTGAAGATTTACAGCTCAAGCAATGTTGAATTTGCGGGTTTTCAAAGATagatgaaaagcagaaaaacaaaacaaaaaacaaaaacatgaacaggACCAATATTGTCCTGCAGTCGTACCTTAATAGAGCTGGGCTGAATGAAGTTTCAGTCACCACAGAAAAAGGCACCTTGAGTACACAGTGTATGTACAAACAAGAACTGAACAATATTACACCCTACTTTAGCTTCTAAAACAATGACGGAAAACTGTAAACCTTcacttgcaaaaaaaaacaaaacaaacaaacacatctatacaaataatttgaagCAATTTagacaaaatattttcttgctTATACAGAAGCAATaccttaaaatacatattttaaacattaattccaGATTACTTTCTGCCAGCAGAAAGCAATCCAATCTTGACATAATTATACATTGTCAcataatatttatgaaattgCCAATTTCCTTAATTTTACAGTCAGCGAAAAATCCACTGTTTCGTGCATCAAAGTGTTTAGTTCAGTTTTGAAAGATTCTGATAGTCATAACATGTACacctatatataaatgtatagttatTTTACGACCATTTCCCTAAAAAATATACCATCCAATCAATCAAAATTTCTGTAATACTTTCAGAAAAGTAtgttctttatataaaatactatatcCTCAAAAACTGGATTTTTATAGGTTTACATTCCATCCTTTTTTTTCACCAAAATAAAGCTTTATATACTTCAGAAAGCTTATAAACACTCccatcttatatatatatatatatatatatatatatacacatacatatacatacacaataaaGTGACTATAAATAAGAGAAGATCTGATTCTAGTTTCACATGTAGAGGAAACCCGTTTGGGGAGGCATATTCTGCCCAGGTTTTTATCCGGTGCAGTGTGGCACTACAAGTTTGGACGATTGTACAAGTCAGGTCCTTCAAATCCAAGGTCAGATTTGCTTTCCAGTTGCTGCTCAGCAGGCCTTGGTTAGGTCAGTTGGCAGTTCTGTAGTGGACATGCGGTACTGAATTTTTGTGTTGGTGATGGCTCCGTGTTTCTGTCGAAGGTGGAGTCTCAGTTGACTCTTGTGGCGAAAGTGCAAGTTGCATTTCTcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69310 lncRNA upstream 1510 29184921 ~ 29185184 (+) True G55461
TU69229 lncRNA upstream 155216 29029318 ~ 29031478 (+) True G55394
TU69185 lncRNA upstream 288001 28897976 ~ 28898693 (+) True G55357
TU69110 lncRNA upstream 553362 28632355 ~ 28633332 (+) True G55308
TU69101 lncRNA upstream 556397 28627663 ~ 28630297 (+) True G55300
TU69342 lncRNA downstream 270466 29458421 ~ 29458743 (+) True G55487
TU69374 lncRNA downstream 453534 29641489 ~ 29641936 (+) True G55512
TU69445 lncRNA downstream 670340 29858295 ~ 29932152 (+) False G55564
TU69444 lncRNA downstream 741820 29929775 ~ 29932152 (+) True G55564
TU69469 lncRNA downstream 787648 29975603 ~ 29976267 (+) True G55586
AMCG00009220 mRNA upstream 11963 29171323 ~ 29174731 (+) False AMCG00009220
AMCG00009208 mRNA upstream 78467 29103608 ~ 29108227 (+) False AMCG00009208
AMCG00009214 mRNA upstream 84617 29075081 ~ 29102077 (+) True AMCG00009214
AMCG00009202 mRNA upstream 166802 29014392 ~ 29019892 (+) True AMCG00009202
AMCG00009207 mRNA upstream 202374 28982329 ~ 28984320 (+) False AMCG00009207
AMCG00009221 mRNA downstream 120901 29308856 ~ 29309773 (+) True AMCG00009221
AMCG00009218 mRNA downstream 178683 29366638 ~ 29402226 (+) True AMCG00009218
AMCG00009219 mRNA downstream 228481 29416436 ~ 29419290 (+) True AMCG00009219
AMCG00009225 mRNA downstream 273530 29461485 ~ 29470524 (+) True AMCG00009225
AMCG00009224 mRNA downstream 296588 29484543 ~ 29487155 (+) True AMCG00009224
TU69299 other upstream 11994 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 79786 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 79786 29103640 ~ 29106908 (+) False AMCG00009208
TU69199 other upstream 174926 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 409073 28766454 ~ 28777621 (+) False AMCG00009204
TU69455 other downstream 719956 29907911 ~ 29911564 (+) True G55573
TU69474 other downstream 807171 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 2973805 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4812841 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4827715 34015670 ~ 34018815 (+) True G56369

Expression Profile