RNA id: TU69444


Basic Information

Item Value
RNA id TU69444
length 2325
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G55564
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29858295 ~ 29932152 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAActtttattgtgctttatttgGCTAGAAGGCATCCAAGGTATCACATTGTCTGGGTGGAATAGAAAGCAAACAGCATAGCAGATATTTGtggtttttaaataaacatttatttacaaaaggacaggaaaaaaaaacacccaaattgttttaaaattagataTATAAatctccaaaaaacaaaaaaaataaataaaaataaattacaagtagaaAAAGCTAAAAGAGATATGTACATGTTTCAACAACAGcacaaaaggaagaaaacataTATGGGGCAAAATGAACTGTGTACAAATCAAACATAGTAAAAAATGTGATCAGAGAggattgatctttttttttttttttttttctttttttacaaaatgtaatttccctGACAGCATAACCTCATGTTATAATAAAGGGtcaattctatacatttcaatggAGAGACAAACAACTGAAATGGGTTAAAATAGATTTCTTGTACCTGTTAATGTTCTTCAGCACATACCATGATTATTATTCTGCGATGATTAGCAACTTATGAATTCAATCATCTTTTCTCATAAATAAAACTTGATTCACATCTATAAAGGAgtttgcaaatatgttttaatagtaTTTCAAGCTCAAACATTACAGTCGCTCcctttaaacaatgtataaaaacaattaaaacgaCCACagatttatgaaaaaataaaaaagtacaaaagttTCTAGCAGAAAGTGTTGTACAATTCTGGGCATCACTAATTTAAGGATGGTAGCTTAAAATTTGATTTTCCatctatatcgatccactgctggatgaatgcctccccaagatgtttgtaggatataaaatgttgtaatgttTCTCTTGTGCCATGCATTCTTGTGCATTTGCTGGTTCAGCATACATATATCCATTCCCCAGTCCTGAGAGTGGCTAGCACTGGTCTTGagcaggtttttgttctatctAGATCGTTAAATGCTTAATTGAGCCAGTTGTGGGtgttaattaggcaaaatgtccggGTGTTCAATGTATCCAGTGATTGGTGATTTacagagacctggaaaacctgcaggattggggctctccaggaactGGGTTAGCCACCCTTGCCCTAGTCCGTCTTGCCTACACTTTGCAGCAGCATGGCCTGAATCTCTCGGATGAGAATAAAGTTCTGATCTGAGTGATTcagatattttgttaattaagattttaattgaAAGGCCAATCAGGTTTTCATAGGAACTGTGATTACAGTACCGAGGTGCCAGGGGAGTTTAAGCAAGCAGAGCGTGAACGTAGCATGGAGAAGTGAGAAGTGTATTGGGGTCCTAAGAAGGGCAAAATAACTGGTCCTCTGTATTTAAGAAGTCCCTTAAATTTCTATGTGGGCAAGAATGTTTACTTTTCAATCAGATTAGCTTACTTTTATGTGTATActtggattttgttgttgttcatgttgctaagagtaagagagagaggtaTAATTTCACAACCATTTCTTGGGTCAAAGCTACTTCTTGAGAAACACATTTCAAGtccaaaaaaacaatttctgcaactaagctttaaaaaaaaaaaaaaaaaaaaaaacctctctctacaaatttattttactaaaacaataaaaacacgtTGCATAATTTCAGACATCACAAAATTTACAGAGTTGATCATGACAATTCAATATCCAAAACAGTACCAACAAAAagtaagaaatgaaaacaatgcaaacaaacaaagcatttgCCCTAATTGAAAACTGAACTTGGTATTGAACAGTTTAAAGATATACTTTCCTTTCCATCTCAAAACTCTTTAATTGTAATACCTTTAAACATAAATGTACATCCATGTCCCATACAAATATACaggcaacaaaacaaatcccacaAGAATATATAATGGTCATGGTTTGTGTGTATGGATGGTGATTCAAAGACTtcatttaattacttaatttaccTCTTGTATTGAGAGTGAATATTTCAAACGTATGAGATTTTCACagtcaatacaatttgaagaaaGCTAGGCTTGTACAAACCGATCTGTATTTTACAGGGTTCATTAGTAATAAGGGGCTGTGCTACTAGGCtttcttttgcatttaataaataaaaagtataagaTATGATCTCACTTCACCAGAAGTCTGTTATCTATAGGTGGGTAGGGCTGAAAACGTAAATGCATAATAAACCTGATCTTCCCTTGTTTATGAAAGACTACCAGTTTAGACAAGATTAAGACCATTAAATTATAACAAATTTAGAATAAACTGCGGGTCaattatggttttaaatgttatttaaaactgaacatgaag

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69374 lncRNA upstream 287839 29641489 ~ 29641936 (+) True G55512
TU69342 lncRNA upstream 471032 29458421 ~ 29458743 (+) True G55487
TU69312 lncRNA upstream 741820 29186694 ~ 29187955 (+) True G55463
TU69310 lncRNA upstream 744591 29184921 ~ 29185184 (+) True G55461
TU69229 lncRNA upstream 898297 29029318 ~ 29031478 (+) True G55394
TU69469 lncRNA downstream 43451 29975603 ~ 29976267 (+) True G55586
TU69479 lncRNA downstream 61470 29993622 ~ 29994641 (+) True G55595
TU69480 lncRNA downstream 63411 29995563 ~ 29995870 (+) True G55596
TU69481 lncRNA downstream 66077 29998229 ~ 29998486 (+) True G55597
TU69522 lncRNA downstream 210060 30142212 ~ 30222127 (+) True G55620
AMCG00009231 mRNA upstream 69406 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 187170 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009227 mRNA upstream 276438 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009222 mRNA upstream 356722 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009223 mRNA upstream 400281 29528879 ~ 29529494 (+) True AMCG00009223
AMCG00009237 mRNA downstream 76650 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009238 mRNA downstream 254748 30186900 ~ 30208729 (+) True AMCG00009238
AMCG00009239 mRNA downstream 286717 30218869 ~ 30223477 (+) True AMCG00009239
AMCG00009250 mRNA downstream 333101 30265253 ~ 30298128 (+) True AMCG00009250
AMCG00009246 mRNA downstream 380642 30312794 ~ 30327528 (+) True AMCG00009246
TU69455 other upstream 18211 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 755075 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 822867 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 822867 29103640 ~ 29106908 (+) False AMCG00009208
TU69199 other upstream 918007 28928892 ~ 29011768 (+) True AMCG00009207
TU69474 other downstream 62974 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 2229608 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4068644 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4083518 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5456762 35388914 ~ 35389327 (+) True G56536

Expression Profile