RNA id: TU69455


Basic Information

Item Value
RNA id TU69455
length 2640
RNA type TUCP
GC content 0.39
exon number 2
gene id G55573
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29907911 ~ 29911564 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

actctcagaccatgagaaacaaaattctcttatctgatgaaacaaagattgaactctttggcctgaatggcaagcataacataacataacaaaatgtggaaaaagtgaagcgctgtgaatactttccggatgcactgtataaacGTGTATAAGCATCTGTCTAAAATATAGATGCATTTAGTAAACATACTAATTTCACACTGTATATTTCAGTATACATTCTTAATTGTATTACACACAAACTTTACATGATTGCAGCTTTAGTGTGATgcttacattatattttcaaaactaaacattaaaaaatactttattttgcaacatttcaacagttaattgtttattgaCTATAAAATAACGGGTGCCCACAGAGTGTCTTCTGTCGGCTTCTATTGGATGTCTACCTACGTATGAGACCTATTTAATGAGACATTTCTGTAAATGATAAGACATGACTTAATTTCAAATCCCCAAATTTTCACAAAGCCATTGTCTCAGTCTGCATCAAAGGCTGAAGAATCACCTCCTTCTTGTAGGAAAAATGCACCAGGTTGACAGCTGCATAGATCTTCTCTTCATGCATAAGAGACTTGTAAAGGGAATACGAATATCCGACCAAGACCACTGTGCAACAAATTTCCACAAATAGCATAATGGTGTATGACACCATCAGCCACTCGCAGTAGGACATGCTGCTACTGCTTTGGACACCATATGAATGGATTGCTGCTCCTGGAGTGGAGGTAACAAACCCAGTTGTTGTCCAGGTGGCTGTAGGTGTAGATGTGGATGTAAATGTGGATGTAAATGTGGTTGTCTTCATTGCTGTAGTATGGGTTGTGGTAGTTGTATAAAGAAAAGTAGTGTCTAATGCTGTGGTTGGCGCAGTGGTTGTGAGTTGTGTAGATGTGGAGGTCACCTGCTTGGTTGTAGTGGCCACTGTGGTTGGCAATGTTGTGGTCATAGCAGTTGTTGTTTCTTCCTTTGTTGTCGTAGGCCAGGTTGTCATAGTCAGGATGGTTGTTGCAGGAACAGGGACCGTGGTCGTAGTTGGAGCTGTAGTTGTGGTTGGGATCGTAGTCGTAGTTGGAGCCGTAGTCGTGGTGGGGACCGTGGTCGTAGTTGGAACAGTGGTCATGGTGGGGACCATGGTCGTGGTGCGGGCCGTGGTCATAGTTGGAGCCGTGGTGGTGGTTGGAACAGTGGTCGTGGTGGgagctgttgttgttattgggCAAATAAGCTGTTCCTTTAATAGGGATTTAATACTTTGTCCCTTTAAATTGTCAGGACTTTCACATGTCTCTGGAGGAGTCGTTTTGACCTTGGCTGGATTTTCTTTGATCCAATTAAACAGATATATTAAATGACAGTCACAATGCCAAGGATTATTGTTTAGAAATACTTTTCGAAGACTTGGTAATGTGCCAAATATGTATTCAGGAAGCGTTGTCAGTTTATTACCCTTTAGATTGAGAGTGGTCAGTTTAGGCAAATCGTAGAAAGTCTTGTTGTCTAAATTCTGAAGGAAATTGTTTTGTAAGTTCAGGTCTGTGAGCTTCTGAAGACCCTCAAAATACTTACTTGACAAATTGGCAAAGTGGTTTCCTGACAGTTGAAGTTTCTTTAGGTTTGTGAGGTTACTGAATATCCCCCAGGGGAGGCTAGTAAGGTTGTTGTTTGCAAGACTAATCTCAGTTAATTTGGGCATTGGTCCAAAAAGAGCAGGGGGCAGGCTTGTTAACTGATTATCATTCAGAGTGAGCTTCTGCATATTAGGAAGACCAAAGAAGATCCCTGTCGGTAGATCAGACAGTGAATTCTTATCCAGAAATAATTTGTGTAACTTGTTATTGTTAGAAAATAAGCCTGGAGGCAATGTTTTAATCTTGTTGCCATTTAGTCCAATGTCAATCAACTCAGACAGATCATCGAAGATCCCATCTGGAATCACAGTGATCTGATTCTCATAGAGTCTGAGTTTCGTTAATTTTCTCAGTTTTGTGAACCACTCAATTGATAGGGATTGGATGTTATTTTTGGCCAAGTGAAGAAAGAGCAGATTTTCCAGCTGATTGAATGCTTCATTCGAAATTGAAGAAATCTGGTTGTTTTGCAGACTAAGGTCTTCCAAGTTTGAGAGATTAGCAAATAACCCCTGCTCTATGGTTTGAAGATAATTTGTTGTTATTCCAAGTATTTTCAAGGTACTCAAATTATGAAATGCACCCACAGGCAGAGATGACAGTTGTGTGTTTGaaaactcaatttctgtaatgttAGTCAAACCTTCAAATGCACCAGCTTCTACTGAACCAACATAATTATTCAAGAAAACCACCTTCTGTAGAGCTTGTTTGTTCATGAAGGCCCCAGATTTGATTGTTGAAAGTCTACTGTTCAAAAAATAGACTTGTGTTACACCACTTTTTATAGTGGCGGGGATTTCTGTGACATTTTTGTAGACATCTTGATAGGGTTCATCATAGTCTCCAAATGCACAGTTGAATAGAAAGGGCAGAAGAAAGATTACAATTCCCTGATGCATTTTATCTCCctgaaaaacagttttgatGTTATCAATCACTactgcacattatatatattacataggCTAATGCTGTGTTGTGGAATTTAAAA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69374 lncRNA upstream 265975 29641489 ~ 29641936 (+) True G55512
TU69342 lncRNA upstream 449168 29458421 ~ 29458743 (+) True G55487
TU69312 lncRNA upstream 719956 29186694 ~ 29187955 (+) True G55463
TU69310 lncRNA upstream 722727 29184921 ~ 29185184 (+) True G55461
TU69229 lncRNA upstream 876433 29029318 ~ 29031478 (+) True G55394
TU69444 lncRNA downstream 18211 29929775 ~ 29932152 (+) True G55564
TU69469 lncRNA downstream 64039 29975603 ~ 29976267 (+) True G55586
TU69479 lncRNA downstream 82058 29993622 ~ 29994641 (+) True G55595
TU69480 lncRNA downstream 83999 29995563 ~ 29995870 (+) True G55596
TU69481 lncRNA downstream 86665 29998229 ~ 29998486 (+) True G55597
AMCG00009231 mRNA upstream 47542 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 165306 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009227 mRNA upstream 254574 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009222 mRNA upstream 334858 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009223 mRNA upstream 378417 29528879 ~ 29529494 (+) True AMCG00009223
AMCG00009237 mRNA downstream 97238 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009238 mRNA downstream 275336 30186900 ~ 30208729 (+) True AMCG00009238
AMCG00009239 mRNA downstream 307305 30218869 ~ 30223477 (+) True AMCG00009239
AMCG00009250 mRNA downstream 353689 30265253 ~ 30298128 (+) True AMCG00009250
AMCG00009246 mRNA downstream 401230 30312794 ~ 30327528 (+) True AMCG00009246
TU69299 other upstream 733211 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 801003 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 801003 29103640 ~ 29106908 (+) False AMCG00009208
TU69199 other upstream 896143 28928892 ~ 29011768 (+) True AMCG00009207
TU69158 other upstream 1130290 28766454 ~ 28777621 (+) False AMCG00009204
TU69474 other downstream 83562 29995126 ~ 29995438 (+) True G55591
TU70069 other downstream 2250196 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 4089232 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 4104106 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5477350 35388914 ~ 35389327 (+) True G56536

Expression Profile