RNA id: TU69522



Basic Information


Item Value
RNA id TU69522
length 501
lncRNA type read_through
GC content 0.30
exon number 2
gene id G55620
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30142212 ~ 30222127 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttcttttaatGCTTTAGCTGAGAAACCTATCCCTGCTTTTTATAAACCACATACTGTATGAAAAGCAGCATTTAGGCATTTTTAGTGTATAagtgtatattttactttagaAATGTGGGGGAATGTTTGTGTTGCCACAGTTGTACATATTTGCACAAGGGAGAAGGTGTACATTATAAATAGAAATATGCTTgaactgtgaaaaataaaactattaaattcTGTTAGAAATGTCTGGTACTCTCttcatatatatgtttacacAACAGTCTCCAAAATAAACCAACCTAAACATGGAAGATGTTCCCCAGATCAcattttatctatttatgtaattaattatgaataaaacagCAAATCGATAACTCAGTAGAGGACAGACTGCTTTTATTACAGATTACATGTAAATCTAAAGATGTGTAAggcataataaaacataatttgaaataaagctATTTAAAATCTGATGACTTTGCTTTTTTCATATTAAAGGGTGAagct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU69481 lncRNA upstream 143726 29998229 ~ 29998486 (+) True G55597
TU69480 lncRNA upstream 146342 29995563 ~ 29995870 (+) True G55596
TU69479 lncRNA upstream 147571 29993622 ~ 29994641 (+) True G55595
TU69469 lncRNA upstream 165945 29975603 ~ 29976267 (+) True G55586
TU69445 lncRNA upstream 210060 29858295 ~ 29932152 (+) False G55564
TU69565 lncRNA downstream 14797 30236924 ~ 30240492 (+) True G55649
TU69568 lncRNA downstream 14797 30236924 ~ 30240492 (+) False G55649
TU69569 lncRNA downstream 17206 30239333 ~ 30242731 (+) False G55649
TU69639 lncRNA downstream 273416 30495543 ~ 30497604 (+) True G55707
TU69678 lncRNA downstream 377347 30599474 ~ 30600234 (+) False G55745
AMCG00009237 mRNA upstream 132370 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009231 mRNA upstream 281843 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 399607 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009227 mRNA upstream 488875 29648617 ~ 29653337 (+) True AMCG00009227
AMCG00009222 mRNA upstream 569159 29563108 ~ 29573053 (+) True AMCG00009222
AMCG00009250 mRNA downstream 43126 30265253 ~ 30298128 (+) True AMCG00009250
AMCG00009246 mRNA downstream 90667 30312794 ~ 30327528 (+) True AMCG00009246
AMCG00009248 mRNA downstream 140925 30363052 ~ 30373668 (+) True AMCG00009248
AMCG00009249 mRNA downstream 166826 30388953 ~ 30404240 (+) True AMCG00009249
AMCG00009245 mRNA downstream 185743 30407870 ~ 30421424 (+) True AMCG00009245
TU69474 other upstream 146774 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 230648 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 967512 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1035304 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1939633 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3778669 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3793543 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5166787 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 7137974 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile