RNA id: TU69565


Basic Information

Item Value
RNA id TU69565
length 3134
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G55649
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30236924 ~ 30242731 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGGAAACTACCtgcaacatattttatttaaactgtcatACACATTAAGTTCTACTGCCAACATTAGTGgaaaatatttccctttttcttttgttcaagTCTGCACAAGATAAAAGGTTTACGCTACAACTTTTCCATAGCTTCCACAAAGCAACTTACTTCAGTCCAAGGGTGGTTCGATTTTGGTAACAGTGAGCCTCTAAACACCCCTGCTGAGCGCAATCAACATACAATATCACACAAAGGCAAACCGTTTCTAAACACCCAATAGTCATTTGGGTCCATTTAATCTTTCGTCCGTTACAATATGCTTAGCACATTTCTTATGGTAAAACTTTTGCATTTACAGcgaactaataaaaaaaaaaaggaaataaaaaaaaaatacataaggaaaCCACTTTTTACAAAAGgtaaaatgaaattatacaaATCGTCGCATGTACAATATGTACCTAAACCAACAGGTCATTTCACGTTGCGGGTGTGGGTTGTCGTCACATTCCATTTTACCCCTTTGAAAAATTAACAGAGATGAAGATGGGCACTCGGGACATCTCACACGAAGTTCTCTTCGGCTACAGGTTGAGGGGAGGCTGGGGTGCCcgtcacatttatatatatatattttataactgaCGCGTTCTGGAATGTCCAAAGGCTCTGTCAGCGCATAGAgaaaattaagatgaaaaacagagtccatttgaaaaaattATGGAGATTTAATCATCAAACTTGATCTTCTTTCCCTGGGGTTTTCCTCCAAAGCCACCACCTCCTCTACCTGAAATGGAAaaagtttaaacattaaaaaaataataattcagaccaatagtttgtacaaaataaattctTTAGCAATTCAAAATTTTGTTCCAACCTCCAGAAATGAATTCGTATAGCTGAAGGATGAGGTGGGGAAACGCAAGATTAACCCTCAGTACTTGGTCCTACCTCCGAAGCCTCCACGGTTGCCACCACGTCCTCCCCTGAAGCCACCGCCACCTCTGCCGAAACCACCGCGTCCTCCTCTGCCGCCACCACCTCTGCCTCCAAACCCTCCGAAGCCACCCCTGCCGCCACTCTGCCTATCACCCTTGGGCTTGGCGTAGTCCAGAGTCACCTTGTTGCCATCAATCTCACAGTCCTCCATGGCTTCTTTGGCAGCCTTGCAGTCTTGCTCGGAGTCGAAATCCACAAAACCGAATCTGAGgaggaaaaaattaaatcactaTTCAAAATTAGGCTTTCCCTGTAGTAAATGTGCTGGATGCAGACGGCAACATGCTTTTACAGCATAGTAGACCTCTACATCCTTGGCACTGTATGCCTGCCTGCACGGTTGTCCTTACACTCCATTAGAAAACAGGGAAATTGACTTTCACATATATAGAACATGCATGTAACTGGCATTTTAGCCAAATAGTGCTGAAGGATGTGTAATAGCATTCACAATACTGTCACAACAGACCTAAAGCATACTCCTAAGGCTGGAGACGCTTGGTGGTCAGATTGcggttgttttgtttacttctcGTGCGAATCCATACACTGTCACCAATCAGACAGAGAGGAGCTCATGAGAAGAGTTACTGAAGGGTCTTAAGCCTGAATAACATTCTGCTCATTCCATGCAAAAAAATACTAGTAGACTTAAGCATGAACAGTGCAAAGACAAGTTATTCATCCTGCAATAGAACCTGATTACAACTATAACCAAACTTAAAGCATTGGGAATCATACCCTTTAGAGGACCCAGTGTCCTTGTCTGTGACTATTCTGGCTGCAACGGCACCTTCAAACGAGTCTCTCAGAGTCTGGTCTGTGGTGTCCTCGGAAAGACCTCTGACAAACAGCGTCTTGGTTGGACCTGAAAGCACAGAAGAGCACACTTAAGTTCAAATGCCAATGCCTTGCACCACATTCCAACAGTGGTATTTTAAAAGCTTAGCAGGTATGAAAACCTCAAAGCAAGTTCACACAGAGGGAACAAACTAGTAGTCTCAAAACCAGTCAGCACTTACCCGAATTTCCTCTGCCACCATCCGATTTCTGTCCACCGGACTGGCTGTATTCTAGTCTGATTGACCTGCCTTCAATTTCTGTGTTGTTCAAGCTTTCAAGGGCATCCTTAGCATCCTCTGCAGTCTCAAACTCTACAAAAGCAAATcCCTTTTGGTCTGCCGTTGTTCTGTGGTATTCTGACAGAAATTGCTTTCTCAAATGCGCTTTGCAGAGCATCTTCTGTTGCACTGTAAGCCAGGTTATTCACTACAAGAGTCTTGCTCCCATTTGAGGCTGAGAAGGGgaggcaaaaaaagaaaaagtcagttGCTTTTCCCCCTCAACACTTTCCAACACCAGGACAGATTTAAGGACTAGATCAGTACTTGACTATCTAGACAGAAATTCAGCAGAGGTTAATCAGAGAGTTCAGTTCATTAATCATTTCTAGTCCAGGGGAAACTAACTTAATTCCCactgtttaataaatgttaGACATTATACAGAAAGATCAGTCtagtgcaaaaaaaataatcatcttCAGAATCAAGACAGACAAGAAAGCAGGAAGAAGCAGCTTTGAAGAACAAAATGGACATGAACTTAAATCTGTTTTAGTCCTTACCGGGAGGAGCTCTGGCCCCTTTCTGGCTCTTGTCTCCTGTGTAATCCAGGATAACTGAACGGCCCTGGACATCCACTCCCTGCTTCTCTTCAAGGACCTTTTCTGCAATGGCTTCAGTCTTGAACTCAAGGTAGGCAATTCTAATgcaacaaaaaggaaaaggttAGCTTTGAAATTTTAGTTTGTGTGTCAGTGGAgctgccaaaaaaataaatcaagatgcATACCCTCTGCTGGTGCCATCCCTGCCGGCTGGTATTCTGACATCGACTGCCTGATCGAACACTTCTTTCAGCTCGTCGATGGTCACAGAATATGGGAGGTTCTTCACAAACAGTGTGCGAACATCCCTCTCTTCTTGCTTTCCTGGGCATTCTCCTTGCTCTTTGCTTTGTCTAGTCTCACTTCTTGTCCAAGTAGCTTCTTTCCATTCAGTTCCAGAGCTTTTTGCAGGTCTTCTTCACTGGCAAAATCTACATAGCCAaatttcctaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69522 lncRNA upstream 14797 30142212 ~ 30222127 (+) True G55620
TU69481 lncRNA upstream 238438 29998229 ~ 29998486 (+) True G55597
TU69480 lncRNA upstream 241054 29995563 ~ 29995870 (+) True G55596
TU69479 lncRNA upstream 242283 29993622 ~ 29994641 (+) True G55595
TU69469 lncRNA upstream 260657 29975603 ~ 29976267 (+) True G55586
TU69639 lncRNA downstream 255051 30495543 ~ 30497604 (+) True G55707
TU69678 lncRNA downstream 358982 30599474 ~ 30600234 (+) False G55745
TU69680 lncRNA downstream 359440 30599932 ~ 30602032 (+) True G55745
TU69754 lncRNA downstream 706874 30947366 ~ 30950209 (+) True G55800
TU69761 lncRNA downstream 915026 31155518 ~ 31163151 (+) True G55807
AMCG00009239 mRNA upstream 13447 30218869 ~ 30223477 (+) True AMCG00009239
AMCG00009238 mRNA upstream 28195 30186900 ~ 30208729 (+) True AMCG00009238
AMCG00009237 mRNA upstream 227082 30008802 ~ 30009842 (+) True AMCG00009237
AMCG00009231 mRNA upstream 376555 29858925 ~ 29860369 (+) True AMCG00009231
AMCG00009226 mRNA upstream 494319 29717027 ~ 29742605 (+) True AMCG00009226
AMCG00009250 mRNA downstream 24761 30265253 ~ 30298128 (+) True AMCG00009250
AMCG00009246 mRNA downstream 72302 30312794 ~ 30327528 (+) True AMCG00009246
AMCG00009248 mRNA downstream 122560 30363052 ~ 30373668 (+) True AMCG00009248
AMCG00009249 mRNA downstream 148461 30388953 ~ 30404240 (+) True AMCG00009249
AMCG00009245 mRNA downstream 167378 30407870 ~ 30421424 (+) True AMCG00009245
TU69474 other upstream 241486 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 325360 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 1062224 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 1130016 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 1921268 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 3760304 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 3775178 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 5148422 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 7119609 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile