RNA id: TU69917


Basic Information

Item Value
RNA id TU69917
length 3595
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G55929
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31548531 ~ 31552162 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGCATCCAGCTGTAAGCGAGTCTTTATAAGCCAGATAGGATTGGttgctgtaattgctgtaaACCCTGAAAATAAATGGCAGGTTTTAGGTTTTGAGATGGCAAAGTGTAAGAGTGAACAAGTCTAACTAAAAGGCATACAAAAATTCTAATAGATTAAAAAGTGTTTCAGATATGTTTTGTTGGCCTCCTTAAGCTGTTTAAAGACTGACTGAAGAGTACTATGTTACACAGTTAAGCAGTTGCTTCTTCTTAGGCAGAACAAAAATCACATCTTGACCTATATTATACTGGTATGTATACAACATGTAGCCATTTTAATTGTGACACCAAAACTCTATATAGCACTTGTATGAAAAGTTTATTAATTCTTCATTTGATTGAATTATGCTCaacatgcacatacatataattttaaatgcttcttGGCAGTGCATTGATGGTGATCTCATTAAACACAGATAAACCATACAAATGGCTGAACTCTAGAATTATAGAAAAGTGCCATAAATACAGCttaaaaagtacaaacaaaagcataattaaTGTAACTGCATTACAtactaatacatgtattttaagcaAAAGACAGTTAAGAGAAAGGCAGCAAGTTGCCTCTTATTAAcactttataattataattagtagccatattttaacataaacaTGGTACATTTACTGAGAAATAacatattgcaaaataatatcTATTGATTCAGGGTATATTCTATTGAGATATTGGGTTGAACTATttccattcaaatatataactttttttttttgcttaggTTTTATGCCAGTGTTTGAGAGAAAGCAATATACACAATCTAGAAGTgtggtgaaataaatacatttgcaccCACTCATTAACAGTACAATCTACATTATGTAAATTAAGCCTACACAGAAAAGGGCTTTTTGCATGCAAACACCACGAAGCCATAAACCAGTGGtacaacagtatttattttctttttttgcaacTTCTATACACCTAGTGATAttcggttttatttttttataattagtattatttatttgtacatttaatactTGGGAGAAAGTTTTCACCTGCTGGGGATTGTAAATGCAAGAGGAGGTGGAGATTGCATCATTAATGACGTACTATAAGCAGCCTACAGGAGGAAATGAATTCTACCATCTCCCTCTGGGCGCTACAGGGAATTAACCCTTCTGAGAGACGAACAGTGCAGAAGATTTTTTGTGTGGTTgtctcattttgtttgtgtaccTTGTTCACACTACAATAGTACAATACAAtcgttaaataaaaaaaactacaatttacacattaaaatataaacatatcaactgtttaaaaacatctgcaaaGCGTGGTTCTTTACACTACAGGCTGCAATAGAGGCTCTGTTCAGTACTCACGGGGATAAAGCTAGTCCTTATTGCTGCAGGAAGTGACCTGCGGATGGGGAGCATGAGATGACGGGATCTCACTCTTTTCACGGGAGAAATCTACAGTAAATGCCTAAAATAGACACAGGCTTTTCTGTACCACAGTGACAAGCAGTGACCGTTTTAGATGAACGTGCAACACTGAACCCCACTGGAGAGAGATGATTTGCAATAGTCTGTGTGAGTTTTTGTGTTGTGGTTTAGAATTAATGTGACAAGTGAAAACTTGCCAAGATGACAAAAGTACTACAAatctatatgtaaaattatatatatatatatatatatataaataaaaaggtctGAATACTGAATCTTCTGCCAGCTGGAGCAAACGATAAGTATTTTTACATACTTTTATACCTACCTCATATAATGGGAAGGAAAGatgggaacaaaataaaatgaggataaaaacaaaaaaataaaaataaagtaaaacaggGTCAAGCAGTGCAAGAAAGACAGTTGAAATGCTAACCTTGTCAACCCTGCctacatattcatataaatatttaggGTTTAGAAAACATTAAATCCCCTTAAATAGGTTTTTAGGAGACAAACTAAACCTAACCCCTCCTCATTGTGTTCATAACTATGCTGTCTGGAACACTCATCTTGATCTTTTTTTATCCTTCatagtttcttttgtttgtttatttttactttagaAGCACCATGTCAGTCCTTGTGAGGATTCCTTCTGGCATAAATCTTTCTTGATTGCACATAAATAGCTTTAAATTAAGTttgtcaaataaacaaatattttaatcaatcaTGAAGATACTGAAAACGAACACTCCCCCGGATTAAACCTAATATTTTACGAACACTGCAGTGTTAGCAGCTAGAAAAATCCCGGATTAGCTGCCGGATTATCCTGCTCCTTCAGTGGCCTTCCAGCAATGGTTAGTTTTCTATTTGACATGCATTGTAAGTAATATTGGTAAGTGGAATGccagactaaaaaaaaaaaaaaacgcaaacTATGTTTCCATATACCCAACATATCGTTCTTTagaatgtacattatatattgtgtttgtagaGGTTTTCCTATAACCTTTCAAACACCGAGAGGTTATTCTTGAGCACTAGAAAGCAATGTTCCATGAACATGGATGAAATACTATGGTACtgtacatttactgtaaaaatgtattttgtcttcattAATATCCAAAGGACAGTctattacaaattatttgtagTTTACAGCTCAATTGTCAGAGGGCAGGCTATTTTAAGATTCTCTGCCAATACAGTTTGAATAAAGCTAAAATGTATCCCATTGAGTCCATACATGTTGACTTGTCTGCACAATCACACCATGCTCTGTTATGTACTAAAGTATTTTagagtaaaaatgaaaacaaacaaacaggcaatAGGTAACCTACTAAATTACTGTAAGAAAGGTGTCAGAGAAAACACCCAACTCTACAAACTAACTGCTgaaatattctgtattttaaaattaaatcaatattaaagtTACCCATTAATTTTAAGCACTTTACTTAGAGTACAAAGTTTCTAAAATCCTCCTTAGTCATTATCACTGACTATACCCAGAAATGACAAGGTTAGCATTTTCCATTCGAGACTAGAAAATGTGTATAGTTCATTACCTTAACTCGAAACAGGCTGTTACGGCACCTAAGGTGTCAGCTGCGCAATTATAAAAGGTTAATATAGCTGCAAGCTGCATGGCTGTCATGAATTTGCACATTATAACTTTTAGAAGAAATCAATTAGCTACCTCAGATGTCAATCAGCAGGGCCCATCCACCGTCATCAATTCTGCTTCACAGCTGCATGCCTAAATGTTAGCGTTTTATCTGTACTACATACAAACAGTGTGAAGCCATACCGTTTAGTAGCAATTTGTTATACCTTTGTACCTGGTTCTTTCAAGCACAACCAAAACTAAAGAGTATGGCAGATTTGCAACAAACTTTCTTATGACTTTTACACAAGTAAGCTTCTTGCAAGAACtccctgattttttttttttttttagaacatgTGCACAGATACAcagcataaataataaattaaaacatatacttgattacactgtatttacagtattgtGATACAAATGCTAAaccttcaatttaaataaaagtactaTCTTCCTGTAAAGATTAA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69914 lncRNA upstream 1299 31542621 ~ 31547232 (+) True G55926
TU69761 lncRNA upstream 385380 31155518 ~ 31163151 (+) True G55807
TU69754 lncRNA upstream 598322 30947366 ~ 30950209 (+) True G55800
TU69680 lncRNA upstream 946499 30599932 ~ 30602032 (+) True G55745
TU69678 lncRNA upstream 948297 30599474 ~ 30600234 (+) False G55745
TU70028 lncRNA downstream 501625 32053787 ~ 32057482 (+) True G56021
TU70072 lncRNA downstream 614703 32166865 ~ 32168048 (+) True G56062
TU70077 lncRNA downstream 622145 32174307 ~ 32179259 (+) True G56064
TU70149 lncRNA downstream 995845 32548007 ~ 32553904 (+) True G56120
TU70257 lncRNA downstream 1395975 32948137 ~ 32950966 (+) False G56211
AMCG00009276 mRNA upstream 124520 31419840 ~ 31424011 (+) True AMCG00009276
AMCG00009278 mRNA upstream 136407 31394879 ~ 31412124 (+) True AMCG00009278
AMCG00009277 mRNA upstream 177754 31355117 ~ 31370777 (+) True AMCG00009277
AMCG00009273 mRNA upstream 411961 31131150 ~ 31136570 (+) True AMCG00009273
AMCG00009258 mRNA upstream 601246 30944371 ~ 30947285 (+) True AMCG00009258
AMCG00009281 mRNA downstream 40886 31593048 ~ 31604365 (+) True AMCG00009281
AMCG00009283 mRNA downstream 368525 31920687 ~ 31940691 (+) True AMCG00009283
AMCG00009284 mRNA downstream 402509 31954671 ~ 31959897 (+) True AMCG00009284
AMCG00009288 mRNA downstream 416657 31968819 ~ 31999086 (+) True AMCG00009288
AMCG00009292 mRNA downstream 456402 32008564 ~ 32009088 (+) True AMCG00009292
TU69474 other upstream 1553093 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 1636967 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 2373831 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 2441623 29103640 ~ 29106908 (+) True AMCG00009208
TU70069 other downstream 609598 32161760 ~ 32165365 (+) True G56060
TU70453 other downstream 2448634 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 2463508 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 3836752 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 5807939 37360101 ~ 37367671 (+) True AMCG00009405

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU189386 True 363 lncRNA 0.37 1 CI01000032 2735046 ~ 2735408 (-)
tiger barb (Puntius tetrazona) TU189386 True 200 lncRNA 0.30 1 NC_056716.1 21919199 ~ 21919398 (-)
mexican tetra (Astyanax mexicanus) TU189386 True 5138 lncRNA 0.41 7 NC_035912.1 8671669 ~ 8684215 (-)