RNA id: TU70018


Basic Information

Item Value
RNA id TU70018
length 2511
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G56012
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31998077 ~ 32031970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNNtgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatattgtattattttaagcagCTAAATAGTTTTGAAATAACCCATCACTATCATATCATGTATTCAGTTCTCAACTCAGTGCAACATAAACCCGTTCAGCTAATGCCAATGTTACAGGCGCTCTAGGGGGTAATGCACCTGAGTGAAGTTgattccttatttttcaaaaataagtaatggtaatggttccttattccttaattttcaaaaataagtaatgattacttctttttatattttcccgttttacaagaaataagtaatggaCACTTATATTATATTCCTGTTTTaagtttttcaacaaaataagtCATGGTTCCTTATTTCTGAACCAcagtttccaaattaaaaaaaagtaatggttccttattccttatttctgtttccctgttttcaAAGTatggttacttatttttacTGTTCCTTGTTGGTTAGTTTTTCAGTTTGcccgtttttgttttgttttgttttgttttttaatgaaatttaaatgtttttttctgtttctagtTTTAAtcaagaaataagtaatggaTACTCATTCCTTATTTCGGTTTCCCTGTTTTCCatgaaataagtaatggttacttatttcttatttcccgTTTCCAAATTTTAGGACATATAGGACAACACGATTACAAACCCATCGATACAATAACATATGACAATACTTCATGGGCTGACAGAAACGCGGTTTTCAATGAGTGGTGCttacttattctttattttcatttcccacTTCTCTCTACTAATAAAAAGTAAGATACAGCATTGTTTGCTTCAGTAGTTCAGGCATCatagatttttcattttatttttttattatgaatgcaatgcaaaacaatacagaataacaGTGACAAAAAGCACCTGGGGTCTATGACAATACAGAGATACCACGCAACGAGTCCCTTCCCTGCACTGGTGGCTCCATAGCGCCGCAGCACCACTGCCTCTCGCTAAAACTCAAGAGCGGGTTCAGGATAAGATGCCTCCTATGTCTTCCGTTGACTTATATAGGGGACTGCCTGAAGTAAACAATGTGTGTTgagatatatttacatatatcaATAAGAAGTAATATACAGCATACATGTCCTTAAACTGGgaagttaaaataaagaataagcagcactaatttattgaaaaaccGTGACACTGTCTCTGTCAGCCCGTAAAGAAGCCCCTCTTTGCCGTAGCCTACTTTCATTTAGTGTCTGATCCATAGTAGATCCTTGAGCCCTCCTGCTGtagtttattacttttaaacataTCAATGTACACAGCATAAGTAATGAGAAATATTGTCATGTTATTTTATCGATGTGTATGTAATGGTGTTGTCATATCATAAAATTcgaaaacaggaaaataagaaataagtaacCGACGGGAAAGTAAAAATAAGgaacaattacttattttgttgaaaaactgaaaacaagaataCGAAATAACTATCCATTACTTATTTCtggaaaaactgagaaaaaacattcaatttttctaaaacaacgaattagaaataaaaataagtaaacattacttattttgcagaaaagtAACAAATAAGTATCCAGTGAATTTATTGAGCaacagtgataaaaaaaaattaatcattacttattttgagaaatcatacataagtaataagtaaccactagttatttttagaaaaataaggaaaatcgACTTCACAGAGGTGAACCAGGCACATAAAACCTTCTTGTACGGGTAAAATAGTTTCAGATAGTAACCTAACTCCTGGAGACAACAACATTATGGACACACAAAACTCACAACACATGGCTAGACAGGTCTATCAGTttctaaaatcatttaaaaaaaaaaacgaaaaaaaactaaactgaaaacaattagaTCTCTCATGGCTTAAAATACCGGTCTTCCAACACAGTAGTTCACGGAGGGGTTCAGAATGAACTATAAcctaatttataatttatccCTGCATAAACCAGAACCCAGAGTCATTACAGAATTGCACCAGACGTCACACGTAAATCCAATTCAATAATTCACGGCTTAAAACTATGAAGGCTGCGTCAATCTTTTTCGATATAAGGAAATGCAAAGACATGACAACTCCTGTTCAAATGCTTGTCACCAATTCTGCCTTGAGCCGGGCCGCCCCAGAGAACATAGTAGACTGCGGTTTGTCGCAGGCCTCTCAAACGTCTGCGTTACATACTAGGTGAGGAAGAATAATCCCTCCACTTTGTTTTTGGTCTCAAGTGTAGAAGGTGATTCAAGTATTTTCCGGTTTGATCAGAGCTTGTCATAGCAGGGTGAGGTTGTGTGCAGGCGATTCATTTTCCTCCATACATTCGCTCAATGTCATCCTGGTAGTGAGTCTTGAGTTCctttcttttcagtttgaaaGCATCCGTGACCAGCCCGGTCTCAGGGGTCCAAGGCTCAGAGCTCAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69990 lncRNA downstream 47404 31950422 ~ 31950673 (-) True G55991
TU69967 lncRNA downstream 82704 31915168 ~ 31915373 (-) True G55975
TU69824 lncRNA downstream 1181986 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 1343056 30652912 ~ 30655021 (-) True G55760
TU69654 lncRNA downstream 1506097 30491238 ~ 30491980 (-) True G55722
TU70199 lncRNA upstream 768565 32800535 ~ 32800895 (-) True G56163
TU70223 lncRNA upstream 812125 32844095 ~ 32844336 (-) True G56185
TU70321 lncRNA upstream 1001007 33032977 ~ 33038239 (-) True G56256
TU70324 lncRNA upstream 1064027 33095997 ~ 33096230 (-) True G56259
TU70325 lncRNA upstream 1064614 33096584 ~ 33096850 (-) True G56260
AMCG00009290 mRNA downstream 44442 31940806 ~ 31953635 (-) True AMCG00009290
AMCG00009287 mRNA downstream 78226 31919162 ~ 31919851 (-) True AMCG00009287
AMCG00009286 mRNA downstream 88883 31906726 ~ 31909194 (-) True AMCG00009286
AMCG00009285 mRNA downstream 97653 31882629 ~ 31900424 (-) True AMCG00009285
AMCG00009282 mRNA downstream 188614 31786769 ~ 31809463 (-) True AMCG00009282
AMCG00009297 mRNA upstream 21838 32053808 ~ 32060010 (-) True AMCG00009297
AMCG00009294 mRNA upstream 34873 32066843 ~ 32083265 (-) True AMCG00009294
AMCG00009295 mRNA upstream 53832 32085802 ~ 32092762 (-) True AMCG00009295
AMCG00009296 mRNA upstream 66820 32098790 ~ 32109793 (-) True AMCG00009296
AMCG00009300 mRNA upstream 107398 32139368 ~ 32141324 (-) True AMCG00009300
TU69876 other downstream 813111 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 1012082 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 1050866 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 1060826 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 1340465 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 2195304 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 2207514 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 3506917 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 3506917 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 3506917 35538887 ~ 35539810 (-) False G56546

Expression Profile