RNA id: TU70069



Basic Information


Item Value
RNA id TU70069
length 797
RNA type TUCP
GC content 0.48
exon number 2
gene id G56060
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32161760 ~ 32165365 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCCGGGCCGCAGCCGAGCTCCCTTCCGCAGCATGCTCTTACAAAGGCCTCTCGGGGTCTCGTATCAAAGTCACTCGCCGGAAGACATGGTCCTCGCAGGCGGGCAGATGGAAACGCTGCTCCGCTCTTTCTCCGGGAAGGGGAATCGCCACGCCGTGACGTCACCGACTCGGGCGAAATGGACTGCTGTCCCGGTTTCCGCCGAGCCGCTCCGGCCTGCCCTGCGGGGAGCGGGGGACGGGGACGGGAAACGGGACTGGCCCTGCAAGCTAGGGAGAAAACACCCTACCAGCCAGCGGTCATACATGTGCGCCCGATGGCAGAGTGAGACGGGtattgaaaacaaaatgcagtgcaTTCACATTTTCCCAAGGAATTCTTGATGTCTACAAGGGTAAAACGGTGAAAAGCCTGAAGCTGGATCCATTGCTGTTGAAAATTCTCACAGGGAATAAAGGCCAGATTTAAATCTAGAACATTTACTGGatttttatttcgtttttttttttaaatggaggaGAAGTCATCTTCccatatttataattaaaaggaACTTCCCAGTTCATGCGAAAACATAGTCCAACATTTCTCTCCGTGTTTCACTGAACGCACTTTATGCTACATAAGTATATACTTTACGATCCTCCGGTGTTCGTGCCAAGTATTCTCTCTCAATAAGTCCTTCAATTCGTTTTTTAATGACAACTGGACTTGGTAAGAAACGTGCCCTCAGCTGTTGAGTCacctggaaaattaaaaaatggtttaAGTTGATGaccacatacaaatataaaata

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70028 lncRNA upstream 104278 32053787 ~ 32057482 (+) True G56021
TU69917 lncRNA upstream 609598 31548531 ~ 31552162 (+) True G55929
TU69914 lncRNA upstream 614528 31542621 ~ 31547232 (+) True G55926
TU69761 lncRNA upstream 998609 31155518 ~ 31163151 (+) True G55807
TU69754 lncRNA upstream 1211551 30947366 ~ 30950209 (+) True G55800
TU70072 lncRNA downstream 1500 32166865 ~ 32168048 (+) True G56062
TU70077 lncRNA downstream 8942 32174307 ~ 32179259 (+) True G56064
TU70149 lncRNA downstream 382642 32548007 ~ 32553904 (+) True G56120
TU70257 lncRNA downstream 782772 32948137 ~ 32950966 (+) False G56211
TU70258 lncRNA downstream 782772 32948137 ~ 32950966 (+) True G56211
AMCG00009293 mRNA upstream 42564 32115478 ~ 32119196 (+) True AMCG00009293
AMCG00009289 mRNA upstream 95061 32060813 ~ 32066699 (+) True AMCG00009289
AMCG00009291 mRNA upstream 109367 32050504 ~ 32052393 (+) True AMCG00009291
AMCG00009292 mRNA upstream 152672 32008564 ~ 32009088 (+) True AMCG00009292
AMCG00009288 mRNA upstream 162674 31968819 ~ 31999086 (+) True AMCG00009288
AMCG00009298 mRNA downstream 17760 32183125 ~ 32196353 (+) True AMCG00009298
AMCG00009304 mRNA downstream 356153 32521518 ~ 32533407 (+) True AMCG00009304
AMCG00009305 mRNA downstream 368512 32533877 ~ 32548495 (+) True AMCG00009305
AMCG00009306 mRNA downstream 388297 32553662 ~ 32564937 (+) True AMCG00009306
AMCG00009308 mRNA downstream 407574 32572939 ~ 32752465 (+) True AMCG00009308
TU69474 other upstream 2166322 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 2250196 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 2987060 29173139 ~ 29174700 (+) True AMCG00009220
TU69266 other upstream 3054852 29103640 ~ 29106908 (+) True AMCG00009208
TU69269 other upstream 3054852 29103640 ~ 29106908 (+) False AMCG00009208
TU70453 other downstream 1835431 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 1850305 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 3223549 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 5194736 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 5444978 37610343 ~ 37616283 (+) False AMCG00009428

Expression Profile