RNA id: TU70199


Basic Information

Item Value
RNA id TU70199
length 361
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G56163
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32800535 ~ 32800895 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTATATGaaacaaagttttatttttttattttacatatctgTACATAACATTTTTCCCAAATAAGATTCTGAATACAATCGGATGAAATGATATTAAcacacttatttaaaatgacttgtGTCAGAAAATCAACATTCACAAAATGTTGAAAACTGAGTAAAGTGAACATATTACCAAAAAGCTACAACTTTACTACAAGGCAGGCATGTATCCTTTGACTCGTTTAGCACCTTCAAATAAAAGTTTCTCAGTTGAAGACTACCATTTGTGCAGAATAAAAAGAGGCCAACTGTAAAATACTGCCCCACTTAAAATTTATAAGTTAGTATTTTTttacgtttttattttctatttgacT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70018 lncRNA downstream 768565 31998077 ~ 32031970 (-) True G56012
TU69990 lncRNA downstream 849862 31950422 ~ 31950673 (-) True G55991
TU69967 lncRNA downstream 885162 31915168 ~ 31915373 (-) True G55975
TU69824 lncRNA downstream 1984444 30809576 ~ 30816091 (-) True G55861
TU69697 lncRNA downstream 2145514 30652912 ~ 30655021 (-) True G55760
TU70223 lncRNA upstream 43200 32844095 ~ 32844336 (-) True G56185
TU70321 lncRNA upstream 232082 33032977 ~ 33038239 (-) True G56256
TU70324 lncRNA upstream 295102 33095997 ~ 33096230 (-) True G56259
TU70325 lncRNA upstream 295689 33096584 ~ 33096850 (-) True G56260
TU70330 lncRNA upstream 342961 33143856 ~ 33144122 (-) True G56265
AMCG00009307 mRNA downstream 252073 32541621 ~ 32548462 (-) True AMCG00009307
AMCG00009302 mRNA downstream 400828 32393705 ~ 32399707 (-) True AMCG00009302
AMCG00009301 mRNA downstream 530081 32220724 ~ 32270454 (-) True AMCG00009301
AMCG00009303 mRNA downstream 600040 32197225 ~ 32200495 (-) True AMCG00009303
AMCG00009299 mRNA downstream 620872 32155100 ~ 32179663 (-) True AMCG00009299
AMCG00009310 mRNA upstream 8039 32808934 ~ 32830294 (-) True AMCG00009310
AMCG00009315 mRNA upstream 51303 32852198 ~ 32873274 (-) True AMCG00009315
AMCG00009316 mRNA upstream 94354 32895249 ~ 32903560 (-) True AMCG00009316
AMCG00009314 mRNA upstream 127373 32928268 ~ 32939975 (-) True AMCG00009314
AMCG00009321 mRNA upstream 149721 32950616 ~ 32958237 (-) True AMCG00009321
TU69876 other downstream 1615569 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 1814540 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 1853324 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 1863284 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 2142923 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 1426379 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 1438589 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 2737992 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 2737992 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 2737992 35538887 ~ 35539810 (-) False G56546

Expression Profile