RNA id: TU70223


Basic Information

Item Value
RNA id TU70223
length 242
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G56185
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32844095 ~ 32844336 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

catgcgtgtgtttttgtgtgtgtaaatgtttgcatattgatttaattatctgtacatgttttttttttaatactcaaTTTCCTTTCTGGTCCTGTGTAAAGAGCTAGATGATGCTTCTTGTTTCTCATAAAGAAGGCTAATGAATGGTAAACCCAATTCTATTATTACATCATTACATCATTATATCCACTTGAAGAtgagatggatggtcacaattGTGCATATCTGCTTTGTTTCCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70199 lncRNA downstream 43200 32800535 ~ 32800895 (-) True G56163
TU70018 lncRNA downstream 812125 31998077 ~ 32031970 (-) True G56012
TU69990 lncRNA downstream 893422 31950422 ~ 31950673 (-) True G55991
TU69967 lncRNA downstream 928722 31915168 ~ 31915373 (-) True G55975
TU69824 lncRNA downstream 2028004 30809576 ~ 30816091 (-) True G55861
TU70321 lncRNA upstream 188641 33032977 ~ 33038239 (-) True G56256
TU70324 lncRNA upstream 251661 33095997 ~ 33096230 (-) True G56259
TU70325 lncRNA upstream 252248 33096584 ~ 33096850 (-) True G56260
TU70330 lncRNA upstream 299520 33143856 ~ 33144122 (-) True G56265
TU70493 lncRNA upstream 1163267 34007603 ~ 34008987 (-) False AMCG00009332
AMCG00009310 mRNA downstream 13801 32808934 ~ 32830294 (-) True AMCG00009310
AMCG00009307 mRNA downstream 295633 32541621 ~ 32548462 (-) True AMCG00009307
AMCG00009302 mRNA downstream 444388 32393705 ~ 32399707 (-) True AMCG00009302
AMCG00009301 mRNA downstream 573641 32220724 ~ 32270454 (-) True AMCG00009301
AMCG00009303 mRNA downstream 643600 32197225 ~ 32200495 (-) True AMCG00009303
AMCG00009315 mRNA upstream 7862 32852198 ~ 32873274 (-) True AMCG00009315
AMCG00009316 mRNA upstream 50913 32895249 ~ 32903560 (-) True AMCG00009316
AMCG00009314 mRNA upstream 83932 32928268 ~ 32939975 (-) True AMCG00009314
AMCG00009321 mRNA upstream 106280 32950616 ~ 32958237 (-) True AMCG00009321
AMCG00009322 mRNA upstream 157092 33001428 ~ 33004290 (-) True AMCG00009322
TU69876 other downstream 1659129 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 1858100 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 1896884 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 1906844 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 2186483 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 1382938 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 1395148 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 2694551 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 2694551 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 2694551 35538887 ~ 35539810 (-) False G56546

Expression Profile