RNA id: TU70321


Basic Information

Item Value
RNA id TU70321
length 2211
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G56256
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 33032977 ~ 33038239 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGCACATAAGAGATAAACCTTCACTGGTTAGATTCGGTGTCTCGGTGCAGTGCTGCCTGTCTGCGCCATTGCGTATTTTTGCAGATCACAAAGGAAAGGGGggatatagttatttatttatggtttgattatttgtttgtttcctggttggtttgtttcttttacataTTGCATTTGCAGCAGGACATCTCTATCACGTGTCGTATCTGCAGTGCCtatatatgttattttaaagaagaaaagtgtTACTTCTTGGACTGCTCTCCAGGCTGCAGGATTGCGGTGCAGTGTCTGTGTAAGGGCTATCTGGCATCTGGGACCTTAGAGACAATCAGCAAGAAGTGGGGAGaaagttgttgttgtagttgtttttgtctttgtttttcacaattgaACGATGATCTGCACACACTGAAAAACGTCATTTAGATCATTGAATGTGCGCTGCATTCGGCAGTTGCTAGGACAGGCGCCTGTCTGCCGCACCTATTGTAGTTTTGCTGTACCTGAAAGTACAGACACCTCTCAGACACAGTGGCCATcctctacattttaaacacgGTGGGATGGATGTGAAGAACCTGAAGGAATATCTCTGCTGGGCTTATTACCAGTACCTGCTCATCACTGGAATCTATGTTCTGGAACCGTGGGAACAGTCGATCTTCAACACAGTTTTGTTCACCATGATTGCAATGGTGGTTTACACGTCTTACGTCTTCATTCCCATCCATGTCCGTCTGGCACTTGAGTTCTTCTCCGGCCTGTTTGGAGGCCAACATGAAAGTACTGTCACCTTGATGAACTAATATTTGGACAGTAGAGCACATCAAAAGCATCAGAAACAAAGTTGTATTGCAGAAGATATTGGAAGACAACTTGTTTTTGCTGTTCTGCTGTCAAAAAAAAAGAGTGGTTTAATGTGAAAagactttattttagatttggCACAGAGAAGTAGTGgaagttttcttattttttctctttcttcaatTCTCCATTTCTAAGCAATATTTAAGCCAGTGTCTTTGCTTGATTGTGATGCATTTTAGTTTGCATGGTAGATGCTGTCATGCAAATAGGCTTTAATTTCCTTAAAGTAATCAATTTTGTTGATATACACCTGTTATTTTAATAGCTTTTTTCCTGGCACACAAGAACAATGTGTTAATAGCCTTTCTTTATTGAACATTCACAGTAAGGCAATTAGGGAACCATGTAATACAATGAATATATAACATTCCTGCACATAAGCAATACGATTTCAAGAATCACCCTGAATTCTACGACAGCATGCACCTTGGACTTAAATGTGGTCAtatacgtttttttatttttacagcctGATACAATGAAGCACACCTGAGCCCAAACTGAAAATAAGATCTGGTATGTCTGCATATAATGCTttataatgttaaattattaataccTTTATAATGCCAGAAGCAATATTAAATGTTCAAAATACTGAATGCCAGAACTAGGTAAAaggtttcagacactgtgaatAATTATTGACGCTACCAGTGTTTAGCCCTGGTTGCTATGCTTGAGTGACTCTAGGCAGAGGTTTAACTCTAAACCTATTCAGTAAGAAAGTGAACTGAAACAAAAGGAGTCCTTGTTCGTGGTTTGCTTTgttctctgtaaaataaaccGTGAAGAATACATATGAACACagcaatgacaacaacaacaataacaaagttTGATGTATGTTGCTGGTTGCCTAGAGTGTTTAGGCAGttgtgaatattattttttttataatgtttttacgCACTATGGATGAAGGTCTGCAATGGTTTACCTAGACTGAAACCTGTTAAAGCTTTACTGGTCATTTCAGCATTTCTTTATGATGCCTTCCTTTCAtgatatttaattgttattactgttgttttttcacttgaTATTTTGTCTAAGTGGGGAAGATAATCTAAAGGGTACTGTTGTACTTTGTGCTAATTTATGAATGCAAATggtaacaacaaaacatttccattaacTTGCTTGCACACTCTAGCCAGTGAGGTTggtaatgtgttattttgtgtgaGGTGTTTGACctgtccattattattttttacatttaatattatctTCATGCTTtctttcaattacttttttataaAAATTAATAGTTTTGCTAAAAGAATGAATGTTAACAATATTTCctaatctgtaaataaaatattaataagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70223 lncRNA downstream 188641 32844095 ~ 32844336 (-) True G56185
TU70199 lncRNA downstream 232082 32800535 ~ 32800895 (-) True G56163
TU70018 lncRNA downstream 1001007 31998077 ~ 32031970 (-) True G56012
TU69990 lncRNA downstream 1082304 31950422 ~ 31950673 (-) True G55991
TU69967 lncRNA downstream 1117604 31915168 ~ 31915373 (-) True G55975
TU70324 lncRNA upstream 57758 33095997 ~ 33096230 (-) True G56259
TU70325 lncRNA upstream 58345 33096584 ~ 33096850 (-) True G56260
TU70330 lncRNA upstream 105617 33143856 ~ 33144122 (-) True G56265
TU70493 lncRNA upstream 969364 34007603 ~ 34008987 (-) False AMCG00009332
TU70494 lncRNA upstream 1010948 34049187 ~ 34050160 (-) False AMCG00009333
AMCG00009322 mRNA downstream 28687 33001428 ~ 33004290 (-) True AMCG00009322
AMCG00009321 mRNA downstream 74740 32950616 ~ 32958237 (-) True AMCG00009321
AMCG00009314 mRNA downstream 93002 32928268 ~ 32939975 (-) True AMCG00009314
AMCG00009316 mRNA downstream 129417 32895249 ~ 32903560 (-) True AMCG00009316
AMCG00009315 mRNA downstream 159703 32852198 ~ 32873274 (-) True AMCG00009315
AMCG00009326 mRNA upstream 863896 33902135 ~ 33935311 (-) True AMCG00009326
AMCG00009328 mRNA upstream 906010 33944249 ~ 33948166 (-) True AMCG00009328
AMCG00009325 mRNA upstream 912908 33951147 ~ 33969816 (-) True AMCG00009325
AMCG00009327 mRNA upstream 932602 33970841 ~ 33976806 (-) True AMCG00009327
AMCG00009332 mRNA upstream 969782 34008021 ~ 34026160 (-) True AMCG00009332
TU69876 other downstream 1848011 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 2046982 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 2085766 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 2095726 30934564 ~ 30937251 (-) True G55878
TU69693 other downstream 2375365 30602579 ~ 30657612 (-) False AMCG00009265
TU70548 other upstream 1189035 34227274 ~ 34229389 (-) False AMCG00009342
TU70552 other upstream 1201245 34239484 ~ 34279180 (-) True G56438
TU70685 other upstream 2500648 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 2500648 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 2500648 35538887 ~ 35539810 (-) False G56546

Expression Profile