RNA id: TU70333


Basic Information

Item Value
RNA id TU70333
length 228
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G56268
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 33281537 ~ 33281764 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cggACGTCACGGAGGCAGTCACTTTATGAACAACAATCATTCAACAAGAGtgtggaaacaaaatgcaatcaaGTTCAACAAGaggcaacattgtaaaaaaacaagcaatacaaaatcaGTTTCACTCACCAATGACATTCACTTGAAGATGAAATCCATGTCCATCTTTTCATAATAAATCCGTGACAATATCATATCCCCTTACTGCGTCAATATCATCtccacctg

Function

GO:

id name namespace
GO:0008190 eukaryotic initiation factor 4E binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70327 lncRNA upstream 171518 33109739 ~ 33110019 (+) True G56262
TU70326 lncRNA upstream 174916 33106370 ~ 33106621 (+) True G56261
TU70257 lncRNA upstream 330571 32948137 ~ 32950966 (+) False G56211
TU70258 lncRNA upstream 330571 32948137 ~ 32950966 (+) True G56211
TU70149 lncRNA upstream 727633 32548007 ~ 32553904 (+) True G56120
TU70350 lncRNA downstream 175127 33456891 ~ 33457172 (+) True G56282
TU70463 lncRNA downstream 756370 34038134 ~ 34042259 (+) True G56376
TU70484 lncRNA downstream 763726 34045490 ~ 34078839 (+) True G56379
TU70574 lncRNA downstream 1081735 34363499 ~ 34368674 (+) False AMCG00009345
TU70575 lncRNA downstream 1081735 34363499 ~ 34366719 (+) False AMCG00009345
AMCG00009319 mRNA upstream 23726 33256469 ~ 33257811 (+) True AMCG00009319
AMCG00009317 mRNA upstream 226049 33050004 ~ 33055488 (+) True AMCG00009317
AMCG00009318 mRNA upstream 264966 33005975 ~ 33016571 (+) True AMCG00009318
AMCG00009313 mRNA upstream 358099 32907934 ~ 32923438 (+) True AMCG00009313
AMCG00009312 mRNA upstream 433664 32847550 ~ 32847873 (+) True AMCG00009312
AMCG00009320 mRNA downstream 155922 33437686 ~ 33451270 (+) True AMCG00009320
AMCG00009323 mRNA downstream 234173 33515937 ~ 33520985 (+) True AMCG00009323
AMCG00009324 mRNA downstream 252610 33534374 ~ 33577599 (+) True AMCG00009324
AMCG00009329 mRNA downstream 709844 33991608 ~ 34001073 (+) True AMCG00009329
AMCG00009330 mRNA downstream 719759 34001523 ~ 34005647 (+) True AMCG00009330
TU70069 other upstream 1116172 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 3286099 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 3369973 29907911 ~ 29911564 (+) True G55573
TU69299 other upstream 4106837 29173139 ~ 29174700 (+) True AMCG00009220
TU69269 other upstream 4174629 29103640 ~ 29106908 (+) False AMCG00009208
TU70453 other downstream 719032 34000796 ~ 34031445 (+) True G56368
TU70456 other downstream 733906 34015670 ~ 34018815 (+) True G56369
TU70668 other downstream 2107150 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 4078337 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 4328579 37610343 ~ 37616283 (+) False AMCG00009428

Expression Profile