RNA id: TU70463


Basic Information

Item Value
RNA id TU70463
length 4032
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G56376
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34038134 ~ 34042259 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTTATTAGATTAAGTTAACAAGTACTTTAATAACAACTGCAACTTTGGGGTTTGAATGCAAGACAGTTCGCAGAAAACAATCATGACCCAAGGGTTACAACATTACACCTACAAAATAACTCCCTCCCAAAGTATACATCGATTTTGATTCCTGGTCTTTTAAAGTACAATATGCAGTAGCTCAGGTACGTAAACATTATCCAACCCTTCTTTTTCAAGTTGCAGAGCAcgaacaaaaatacaacacaccGATGATAGCGACTGCAAGAAAATGCCAAGCACAAGatggagcagacacaaacatatTGGTCTCTTGGTACAGGGCCTGATGCAGGAGGTCAATAGTCTGACATTTATACCAGTGGTGTGAATATTATGTTGGAATATTGGGCACTTTCTGGGGCATGTTCACTTAAACCTGGCAGTGAACGATTAGTTTTATTAACTGCATTTAATGAGAATCAAGAaagtaaagacaaaaacaagaaaggcGCAAAAAGGTGGATCTCTCTCATCCAATGGATTGAACTCTGGGGGAATGAGGAAAGGGGAGCTGGGAGGTTAAGACTGAAAAGCTACATGAATTACAACAGGGAGAAAAAgctatttattaaattgtaacTAAATAGCTTTAcgttaacagaaataaataactcatattactacagtatatattaaatatattaaaccatTTCACATTTCCATGATCTGTTAGTGTATGGCACATTTGAGATTAATATCTTCTGATTCACTTGCAAAAGACATGAGTGATGTAAACTGGAGTTAAGGcatcaaataaatgtaaggGGCGGAGAAAAAGGAagactgatttcacattaaagTCTTGGAGTGGCAAATATCACACAGAACTACCGGGTTCTACAAATGGGAGTGCAATTTGCATCACATTAACTTCATGGCAATGACTGGAAGTGAGGTAGTAAACTCTGTGGATATTAACATATtgaataatgcagaaaaaataataaggcaCAATGACAatgtatcttggaaaacaaattcactagtgaattaaaactaaaattaaaattccatTTGTAAACAGCCTACAAATGgcagcaacaaaaaaaaccaTGTTGAAATGATTCAATAGGTATTaagacacaataaaaacatgaacattagATTAATCTTATTTCAGATTATTGTTCTCTGACATGTACAGGGTCACATGTAGTCGTTAAACATGACACTCAATATCAGTCCATGATTGTTAAGTTTTCAAGTGCAAAGGTTTTTCTGTCATTACATTGGCAAAACCGACcatataaaaatactgtaaaaaacattaaagtatgCAGTTTCATACAAAATGCACTGGTACCAAAGCAGCAATTTTAATGTTACTAGTATATTTATGTGTGCTTACCAAAACTAGAACAAACAACAGTATGGTCATATGAAATCAGCTGGTTTAGCAGGAATGTTAGATGATAAacagagttttatttttctataaataatAGATGTTTTAGAAAGACACAAATATGATCTAATCTGACCATGAGAAGCAGAAGATGAAGTTAGGTTGCAGCTGCAATCCTGGTAGTTTGACATAGAAAATATCTCTGACAGGGGCAATGGGACATTGCATCATGAAATGAACTTACTACAAAGCTGCCGATTGGCCCCTCACCCTGCCTCTGTTAATCTACACAGCACACAAGATTCACTTCCTCTCTTGCTACAGCTCGATGGGCCTGTGGAGTTACCTagtgtaatggggctcattcAGCATAATGAGCATGTTACAAGTGATGTAACCCGACAGTGAAATCAATACAGTAGAATACACTACTGGGTGGAATTGCTGCGGTGCGGAGCGCTCAGAGGGGCGTCCGTGGTGTGCGGTTTGGATCCCGAGCAGGGAGCACCGACTGCACCGGCTACACTCGCAAAGTCAGgagttattttctctttcagataaaCAAGGTTGCAATAGCAACCTAACTTTCTTTCAAGTCAAAAATAGTTGCCAAAGGGACAATGGGATACCATGTTCCGAAGCAATAGCTTCAATCAGAGCTGAGGCCTTAAAGTGGCTCCAGCAGTTCAAAAGAACCAAACACAGGTGCTCCCATGCAATGTGCCACCAGCCTGTCACAGAACTGCCTGCACTTCCTTGACTTAACACAAGGGAGGTGATGGAAACAATAGAAACTACAGATTCACTGTAGAGCGATGCCAGGCAAGGAGACCTGCTGTGTGGCTAATCTCGAACATTTAGCATTGGGATCGCTAAGGCCTGCTGGAGTAACAGTACTCTCTAgtgttgaaagaaaaataccCTGAAACAAAAGGGAGATTTCAATGATAACAATGGTAACAGAAAACTAAACTAACAGATTAAGCTGCAGAATTGCAGCCACAAAAGGcagcaaaaatacatattataatttaaataatgactaAGAATGATCAAATGCCTTGATATGGGCAGTTTTCAGCTTTCCGATTCAATGGACAAGGCGAAACAGGGCCTAAAGAAAGAAGAATAGAATAGAAAACATGTCCTCTCAGAGCTTCTCCCCAAATTGTGCAAGTGAAAACAGAAAGTGCAGCTGACCAGAGGCAGCGGGAAGGTTCATCTGTGACGCATCTTCCAAGGGTCTACTGGCTGCTTTATGATCAGTTTTCAGCACTTCCTGTTCCGTGATGCAATGTCCCATAGCCCCTTTAggagctattttttttttaatttaaagagaactaaaactatatatatatataaaacctataTCATTTAGTACCGTATACGTACATACTTATGCGTGACAAAGTTTCACGaacctttctatttttaatctttttgcaagtaaaaacatttaaaagtccAAACTTGAAAACATAAATTTATACATGGTAGACAGTTACTTGTAACTAGTGTTTATAGTTCAGGTTTATTCTTGAAATTATTCAGAATCGACGTGATTAATAATAGTCACTTTCTATCTGCTACCAGTACCAGACTACCAGTAATCTGCAGAAAACTTGGCTTTCTTGTGTACACTGAAGTAGCCAATAGCGTAGAAAGTGCACCAAATATAACCAGTTATATTCAGTGGCACTTATAAATTGTTATGCAAGTATTTGCTTTTGCGAGGACTGTAGTCATTTGGCGATTTCCACAGCAATTATTACCAATGAAAATATTTACGTATAcggtataataaatacatgtgtttgaATTCGAATTTTAAATCAAGTATTTGAAGTAAGCTTTACTTAAACAGTCAGattaacaaattcaaattgtTTCTTTCCTTAAATAAAGAATGTTTAACACCGGAAAATGACTTAAATAACACAACCTCCCTTGaaagtatacatttacatttagtatCCTAAGCTTGGaacttcaaaacattaaaaccatAGATCATACATGCTTCATCTTCAAAGGTCTTCATCCTCACACAGCAAAGGTTCCACTTCTGGAATTTTCTTCAGGGCCAGTAGGTTCAATTCAGTGCATCTGTGTTTTCGATACAAGATGAACTGGGCTGAGATCTATAGTCATTCTTGTGAAGGAAATGAATATGCTGTTTTCTTGGGGTCTGTCTTCCTGAGACCTACAATGCTACTGCAAAAAATTAAATGGTTACATGATGTGTAGTACTAATATTACTATTTTCAACGACAAACTTTTTCACAGAAGTCTGCCCACGACCTAATTTCCCAATACACTGTACAGGAGCCCATTGTCAATGTCATCCGAGACGCTGAAAAGCTTTATAAAAACTTCAGCTGAAACTCTTGCACTATCCTACATGGTTTCACAGGAAAGGTTACATTATTCAAAAGTGTATGGTTTAACCAAGTGAATCATTTCAAGTAAAAGGATACAAAGAAATCAAGGAATAGCACTCCAAGGCTTCCGATGAGCCAGGCCAGGTGGTTGAGGATGAAGACGCTCTTTGAACTCTTCAAAGCTGGCAGGATCACAATAAGGCTTAACCCATACGTTCCATTGCCCAGCATAGCCAGTGCAAACAGCAAGTATGAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70350 lncRNA upstream 580962 33456891 ~ 33457172 (+) True G56282
TU70333 lncRNA upstream 756370 33281537 ~ 33281764 (+) True G56268
TU70327 lncRNA upstream 928115 33109739 ~ 33110019 (+) True G56262
TU70326 lncRNA upstream 931513 33106370 ~ 33106621 (+) True G56261
TU70257 lncRNA upstream 1087168 32948137 ~ 32950966 (+) False G56211
TU70484 lncRNA downstream 3231 34045490 ~ 34078839 (+) True G56379
TU70574 lncRNA downstream 321240 34363499 ~ 34368674 (+) False AMCG00009345
TU70575 lncRNA downstream 321240 34363499 ~ 34366719 (+) False AMCG00009345
TU70601 lncRNA downstream 540688 34582947 ~ 34662345 (+) True G56474
TU70625 lncRNA downstream 920495 34962754 ~ 34963224 (+) True G56495
AMCG00009330 mRNA upstream 32487 34001523 ~ 34005647 (+) True AMCG00009330
AMCG00009329 mRNA upstream 37061 33991608 ~ 34001073 (+) True AMCG00009329
AMCG00009324 mRNA upstream 460535 33534374 ~ 33577599 (+) True AMCG00009324
AMCG00009323 mRNA upstream 517149 33515937 ~ 33520985 (+) True AMCG00009323
AMCG00009320 mRNA upstream 586864 33437686 ~ 33451270 (+) True AMCG00009320
AMCG00009334 mRNA downstream 21305 34063564 ~ 34068571 (+) True AMCG00009334
AMCG00009337 mRNA downstream 38235 34080494 ~ 34090966 (+) True AMCG00009337
AMCG00009338 mRNA downstream 50467 34092726 ~ 34108014 (+) True AMCG00009338
AMCG00009336 mRNA downstream 76827 34119086 ~ 34121611 (+) True AMCG00009336
AMCG00009335 mRNA downstream 82770 34125029 ~ 34133695 (+) True AMCG00009335
TU70453 other upstream 6689 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 19319 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 1872769 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 4042696 29995126 ~ 29995438 (+) True G55591
TU69455 other upstream 4126570 29907911 ~ 29911564 (+) True G55573
TU70668 other downstream 1346655 35388914 ~ 35389327 (+) True G56536
TU70945 other downstream 3317842 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 3568084 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 4399996 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 5392641 39434900 ~ 39436995 (+) True AMCG00009480

Expression Profile