RNA id: TU70552


Basic Information

Item Value
RNA id TU70552
length 1486
RNA type TUCP
GC content 0.44
exon number 4
gene id G56438
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 34239484 ~ 34316008 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAAAATTGCAGATAATTTCCTAGTGCAGAAGCTGCTCTCTACAGCCTAGGCAgcggcagcggcagcagcagacaactgctctctctctctttctctctctctctctctctctctctctctttctctctctctctccccatctacccctctctctctttctttctgttcgTTGCCTTCAGCTTTCAGAACTGCTCTGGACAAAACCCTGTTTCTCTTCAAGGGAGTTTCACTGGCACCTTTTCATTTCAACTGCAAGGGAGACATTCTCTTAGATGGAGCAGTTAAAGAATGGACTCCTGGATTAAGAAGTCTATATTCTGTGGCATTGCTATCACAGCATCTACATGGATAGTCTGAGCCCTGAAGATCACTGCTGAGTGTGTAGAGTTCAGGGATTTGTTGACTTGATTTTATTCACTTTTCCTcctttaagtatttatttttttccgaCTTCTTTGGTAAGTACTGTGGGGATGTGCTGTGTACACTGCCGGAGCCCCGGTTTGCTCGTCTCTCGACGTTGATTTAGAAAGAATTTAGCAGCAGAAAGCCACAAGACATCAGGACAACAACTGGGTGCTTGTTTTTATCCCTGAAGGAAAATCATCCTTGGAGGTGGAGCTTGGTTGTTAAAGACCCTTAAAAAGAAGAAGTAAGtgagaataaaaaacatacaaaagaaagaaactgggATAGAATCCAGTTGATGTCATAAATTACCATCAAGAAGTACAAGCttggacattttaaataaatccaataaaaattaaaagacacagaggaagaaaataGGTATTTTTAGAATAGTACTATAAACCGATATCCCAGGGATGGCATATTGTCCTACTCTGTAGTGCTGCCCCCTCCTAGTTTCTGTCACTTGTTCTTCTTCTAAAAAGCAGGCTGTGGATGTTCCTGATGCTCCTTTGACACCGTTCTGAAATAATCCCAACAAAGGCAGCCTCCACAGCCGCACGAGTGGAGTCCTCTTTTGAAAGGAGAGGAAGTTGGTGGTGTTTGGTGAAGCCAAGTGTTTTCGCTTTTCCTTTCAGTGAAAGCACTGACTAAACCATCCGAAAGCCATGCAGGTCTCAATCGCGTGCACGGACCACAACTTGAAGGCACGGAATGGAGATGACAGACACGGCAAGCAGAACGCCACCAGCCCCAATGTGGTCAATGCAGCCCGAGCCAAATTTCGGACCGTGGCTATTATTGCAAGAAGTTTGGGATCTTTTACTCCGAAGCATCACATCTCTCTGAAAGAGTCCACTGCAAAGCTCACAGGGATGAAATATAGGAACCTGGGGAAATCAGGACTTAGAGTATCGTGTTTAGGTCTTGgAACTTGGGTTACTTTTGGAGGTCAGATTTCAGACGAGGTGGCTGAGCAGCTAATGACAATTGCATATGAGAATGGAGTCAATCTGTTCGATACTGCCGAGGTCTATGCTGCTGGCAAGTAGGTTGAATACATCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70508 lncRNA downstream 114505 34123606 ~ 34124979 (-) True G56401
TU70494 lncRNA downstream 189324 34049187 ~ 34050160 (-) False AMCG00009333
TU70493 lncRNA downstream 230497 34007603 ~ 34008987 (-) False AMCG00009332
TU70330 lncRNA downstream 1095362 33143856 ~ 33144122 (-) True G56265
TU70325 lncRNA downstream 1142634 33096584 ~ 33096850 (-) True G56260
TU70572 lncRNA upstream 78093 34357273 ~ 34359038 (-) False AMCG00009347
TU70644 lncRNA upstream 881411 35160591 ~ 35160877 (-) True G56513
TU70646 lncRNA upstream 893696 35172876 ~ 35173249 (-) True G56515
TU70654 lncRNA upstream 1069264 35348444 ~ 35348927 (-) True G56522
TU70664 lncRNA upstream 1079160 35358340 ~ 35358650 (-) True G56532
AMCG00009341 mRNA downstream 18057 34220065 ~ 34221427 (-) True AMCG00009341
AMCG00009340 mRNA downstream 27310 34198215 ~ 34212174 (-) True AMCG00009340
AMCG00009339 mRNA downstream 70416 34140106 ~ 34169068 (-) True AMCG00009339
AMCG00009331 mRNA downstream 163390 34071836 ~ 34076094 (-) True AMCG00009331
AMCG00009333 mRNA downstream 188747 34042076 ~ 34050737 (-) True AMCG00009333
AMCG00009348 mRNA upstream 31649 34310829 ~ 34333009 (-) True AMCG00009348
AMCG00009347 mRNA upstream 55081 34334261 ~ 34362341 (-) True AMCG00009347
AMCG00009350 mRNA upstream 163433 34442613 ~ 34448638 (-) True AMCG00009350
AMCG00009353 mRNA upstream 213951 34493131 ~ 34493816 (-) True AMCG00009353
AMCG00009354 mRNA upstream 228123 34507303 ~ 34507946 (-) True AMCG00009354
TU70548 other downstream 10095 34227274 ~ 34229389 (-) False AMCG00009342
TU69876 other downstream 3054518 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 3253489 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 3292273 30944367 ~ 30947211 (-) True G55881
TU69850 other downstream 3302233 30934564 ~ 30937251 (-) True G55878
TU70685 other upstream 1259707 35538887 ~ 35539810 (-) False G56546
TU70686 other upstream 1259707 35538887 ~ 35539810 (-) True G56546
TU70688 other upstream 1259707 35538887 ~ 35539810 (-) False G56546
TU70712 other upstream 1592943 35872123 ~ 35872597 (-) True G56568
TU70990 other upstream 2936780 37215960 ~ 37220076 (-) True G56800

Expression Profile