RNA id: TU70674



Basic Information


Item Value
RNA id TU70674
length 691
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G56541
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 35538887 ~ 35539807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcagAAATCGagactcatcagaccaggcaacatttttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacaagtggttatttcagtcaaagttgatgttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccacATACTGGATGTTtgtcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggccgtctggca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70631 lncRNA upstream 471658 35020234 ~ 35067229 (+) True G56501
TU70625 lncRNA upstream 575663 34962754 ~ 34963224 (+) True G56495
TU70601 lncRNA upstream 876542 34582947 ~ 34662345 (+) True G56474
TU70574 lncRNA upstream 1170213 34363499 ~ 34368674 (+) False AMCG00009345
TU70575 lncRNA upstream 1172168 34363499 ~ 34366719 (+) False AMCG00009345
TU70680 lncRNA downstream 35266 35575046 ~ 35576926 (+) True G56542
TU70711 lncRNA downstream 331048 35870828 ~ 35871040 (+) True G56567
TU70726 lncRNA downstream 386158 35925938 ~ 35926195 (+) True G56582
TU70728 lncRNA downstream 387592 35927372 ~ 35951982 (+) True G56584
TU70730 lncRNA downstream 409071 35948851 ~ 36034695 (+) False G56584
AMCG00009372 mRNA upstream 446001 35085474 ~ 35092886 (+) True AMCG00009372
AMCG00009371 mRNA upstream 472555 35062938 ~ 35066332 (+) True AMCG00009371
AMCG00009370 mRNA upstream 598260 34936048 ~ 34940627 (+) True AMCG00009370
AMCG00009369 mRNA upstream 652941 34867644 ~ 34885946 (+) True AMCG00009369
AMCG00009368 mRNA upstream 673247 34844468 ~ 34865640 (+) True AMCG00009368
AMCG00009375 mRNA downstream 306190 35845970 ~ 35846681 (+) True AMCG00009375
AMCG00009377 mRNA downstream 665030 36204810 ~ 36205884 (+) True AMCG00009377
AMCG00009376 mRNA downstream 666105 36205885 ~ 36206498 (+) True AMCG00009376
AMCG00009378 mRNA downstream 870278 36410058 ~ 36417003 (+) True AMCG00009378
AMCG00009380 mRNA downstream 975414 36515194 ~ 36515726 (+) True AMCG00009380
TU70668 other upstream 149560 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 1507442 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 1520072 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 3373522 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 5543449 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 1820321 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 2070563 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 2902475 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 3895120 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 4408226 39948006 ~ 39949200 (+) True G57430

Expression Profile