RNA id: TU70686


Basic Information

Item Value
RNA id TU70686
length 896
RNA type TUCP
GC content 0.47
exon number 2
gene id G56546
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 35538887 ~ 35539810 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aagcaattttgagcgtggcatggttgttggtgccagacggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggacaAACATCCAGTATgtggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaacatcaactttgactgaaataaccacttgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacgtacaaccttgaggcggatgggctacaacagcagaagaccccaccgggtaccactcatctccactacaaataggaaaaagaggctacaatttgcacaagctcaccaaaattggacagttgaagactggaaaaatgttgcctggtctgatgagtctCGATTTCTGTTGAGACATTCAGTTGATCAGAATTTGGTgtaaacagaatgagaacatggatccatcatgccttgttaccactgtgcaggctggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtgccaatagggcatcgtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggctacttccagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70672 lncRNA downstream 21361 35517092 ~ 35517526 (-) True G56540
TU70667 lncRNA downstream 162518 35376086 ~ 35376369 (-) True G56535
TU70664 lncRNA downstream 180237 35358340 ~ 35358650 (-) True G56532
TU70654 lncRNA downstream 189960 35348444 ~ 35348927 (-) True G56522
TU70646 lncRNA downstream 365638 35172876 ~ 35173249 (-) True G56515
TU70692 lncRNA upstream 50958 35590768 ~ 35591092 (-) True G56549
TU70707 lncRNA upstream 242614 35782424 ~ 35814214 (-) True G56564
TU70714 lncRNA upstream 349640 35889450 ~ 35889682 (-) True G56570
TU70757 lncRNA upstream 540825 36080635 ~ 36105419 (-) True G56611
TU70758 lncRNA upstream 556998 36096808 ~ 36393518 (-) True G56612
AMCG00009363 mRNA downstream 682420 34844519 ~ 34856467 (-) True AMCG00009363
AMCG00009365 mRNA downstream 705720 34832534 ~ 34833167 (-) True AMCG00009365
AMCG00009364 mRNA downstream 770821 34765834 ~ 34768066 (-) True AMCG00009364
AMCG00009366 mRNA downstream 793097 34745118 ~ 34745790 (-) True AMCG00009366
AMCG00009362 mRNA downstream 838366 34699864 ~ 34700521 (-) True AMCG00009362
AMCG00009374 mRNA upstream 367402 35907212 ~ 35908512 (-) True AMCG00009374
AMCG00009383 mRNA upstream 996356 36536166 ~ 36550686 (-) True AMCG00009383
AMCG00009385 mRNA upstream 1036397 36576207 ~ 36576473 (-) True AMCG00009385
AMCG00009384 mRNA upstream 1080596 36620406 ~ 36623497 (-) True AMCG00009384
AMCG00009382 mRNA upstream 1100424 36640234 ~ 36663731 (-) True AMCG00009382
TU70552 other downstream 1259707 34239484 ~ 34279180 (-) True G56438
TU70548 other downstream 1309498 34227274 ~ 34229389 (-) False AMCG00009342
TU69876 other downstream 4353921 31165011 ~ 31184966 (-) True AMCG00009275
TU69861 other downstream 4552892 30972953 ~ 30985995 (-) True AMCG00009269
TU69860 other downstream 4591676 30944367 ~ 30947211 (-) True G55881
TU70712 other upstream 332313 35872123 ~ 35872597 (-) True G56568
TU70990 other upstream 1676150 37215960 ~ 37220076 (-) True G56800
TU71449 other upstream 3040475 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 3295506 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 4608915 40148725 ~ 40157471 (-) False AMCG00009521

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043455 True 4564 mRNA 0.42 5 NC_007134.7 41912151 ~ 41931897 (+)
eurasian perch (Perca fluviatilis) TU320521 True 1260 lncRNA 0.44 1 NC_053135.1 20271475 ~ 20272734 (-)
striped catfish (Pangasianodon hypophthalmus) TU25200 True 2648 lncRNA 0.35 1 NC_047596.1 3649331 ~ 3651978 (+)
mexican tetra (Astyanax mexicanus) TU320521 True 675 lncRNA 0.48 2 NW_019170901.1 198066 ~ 198841 (+)