RNA id: TU70728


Basic Information

Item Value
RNA id TU70728
length 739
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G56584
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 35927372 ~ 36034695 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agcagaaggcagtttgttaatttgttaattgataaataataatctattaacatctatttttgaaatcattcttactttatagcattttttcacacctgcctaaaactattacacagtactgtatatgtgttttatGACATGAATGAATACTTCATagtgtattcatatttgttCTGCTACAACTAAGTTCATATGGTAAAAgtcttgtttctgttttctaaaGTAATTgtgagtttttgtattttgagttTCTGTATTTCGTTGTGGTCACTTTAAGAATTACAGTCTGTCAGTAACAGGAAGTTATGTCATGTGAGTAGTGATCAGGAAGTAAATAAGCATGTTGTCTTGTTTTATCTAAGTTAATCCAGCTAATCCTGTATACATATTATGCCTTTGGTAGCATTAAggaacacaagagatgcacaggacaaatgtgatgccaaatgctgtgtggcgcaacatacaggaccactcagagggctggccaatgaaaataaAAGAGGACCTGCAGATGGCCATGCCTGTGTTTCCTGAGGCTGATAACAGCGCTAcgtgagagactgagagagggtGGACTCGCTGTGTaacacaagagatgcacaggacaaatgtgatgccaaacgctgtgtggcgcaacatacaggaccactcagagggctggccaatgaaagtaagtgagcaaaggaaacacagagttagtgagaagagcaggaggaaactgagctcagagttattg

Function

GO:

id name namespace
GO:0017144 drug metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70726 lncRNA upstream 1177 35925938 ~ 35926195 (+) True G56582
TU70711 lncRNA upstream 56332 35870828 ~ 35871040 (+) True G56567
TU70680 lncRNA upstream 350446 35575046 ~ 35576926 (+) True G56542
TU70677 lncRNA upstream 387565 35538887 ~ 35539807 (+) True G56541
TU70676 lncRNA upstream 387592 35538887 ~ 35539780 (+) False G56541
TU70770 lncRNA downstream 524456 36476438 ~ 36479375 (+) True G56623
TU70776 lncRNA downstream 675213 36627195 ~ 36631814 (+) True G56629
TU70777 lncRNA downstream 675213 36627195 ~ 36631814 (+) False G56629
TU70862 lncRNA downstream 923096 36875078 ~ 36875398 (+) True G56698
TU70857 lncRNA downstream 948311 36900293 ~ 36975061 (+) True G56694
AMCG00009375 mRNA upstream 80691 35845970 ~ 35846681 (+) True AMCG00009375
AMCG00009372 mRNA upstream 834486 35085474 ~ 35092886 (+) True AMCG00009372
AMCG00009371 mRNA upstream 861040 35062938 ~ 35066332 (+) True AMCG00009371
AMCG00009370 mRNA upstream 986745 34936048 ~ 34940627 (+) True AMCG00009370
AMCG00009369 mRNA upstream 1041426 34867644 ~ 34885946 (+) True AMCG00009369
AMCG00009377 mRNA downstream 252828 36204810 ~ 36205884 (+) True AMCG00009377
AMCG00009376 mRNA downstream 253903 36205885 ~ 36206498 (+) True AMCG00009376
AMCG00009378 mRNA downstream 458076 36410058 ~ 36417003 (+) True AMCG00009378
AMCG00009380 mRNA downstream 563212 36515194 ~ 36515726 (+) True AMCG00009380
AMCG00009379 mRNA downstream 576964 36528946 ~ 36545717 (+) True AMCG00009379
TU70668 other upstream 538045 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 1895927 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 1908557 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 3762007 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 5931934 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 1408119 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 1658361 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 2490273 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 3482918 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 3996024 39948006 ~ 39949200 (+) True G57430

Expression Profile