RNA id: TU70777


Basic Information

Item Value
RNA id TU70777
length 1825
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G56629
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36627195 ~ 36631814 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAAACACAACAGGAATAACTTGTGTTACGGAAAATATTCCATAACAGTTGTTCTACATCCTAACTTCCCACATGGATGGGAtagctttttaaacaaaacccaatccccaatatgttttacattaaacagtGGTGAACAGCTGTTTGGAAGCCCAGCAATCTGTTTTAACGGTGCAATGTGGTACTGTAGCTCTGTGACTGTTACGCTTATTAGCACACAATGTTGAACTCACTGAGTGTATAAagatgtgacttttttttttctattactcCTATTGGCATCTTCCAGATCTATGAAGGCATGTTTGGGAAGGACAGCAGTCTGCATTCCACTGCAACTCTATTTAAAGCAGCCTTGACCAAAGCCTCCCCAGCTGTTATTCCACCCACTGCTGTAAAACTGGACAACGCAAAGCAAACCATGGGTAATCCAGGTCAGCTGGACTCCTCACGATATGTCATACCGACTCTGCTGATGGTAGGCTGGATAGTGGGATGTGCAGTGGTTGTCTACTTTGTGTTTTCATAGGAGGAAATTCAAGATGCAAGACCCTAAGAAGAATTAATAGAAGATTACATTTcttagtctgtgtgtgtgtttttgttagtaTCCtgatgtaaatatacattttaataaccaGCAGTATTGCACCAGAAATAATATACTCTGCTTTATTAGTGGAAATCGACTGTATCTCTTCAAATCTAATCTGTCATATTAGGCCTCTTTCAGAATGTACACCCATCAGAGAAATATGCATTTGGGGGGCATCTATATGTGCACAGAAATTCATAAACTGTCAACTGCTGATGTCTCAGTAAACAATTTGATTTTAACTGGTTCCTCTTCTTTTATTATAATGGTGAAATGAATGATTACAAACATATGGCTATCTGTAGAACATCTgatagaaactaaaaaaaaaaataataataataataataataataataataataataataataataataataataataataataatatccattcCGGCTGAGACAGATAATGAAGCAAGCAGTGGTTGAACTCCTCCTaagagggggaaataaaacagttattttGCTTTGTGGGTGCCTttgcttctttgttttcctAGTTTGAGTGGCATATTAATCACTGCAATTGTTAATATGACATGTATTGTGTAGCACAATAAGAAACGTCAGTCATTTCCTCACAGCAATAAGGTGCAATATTAAAAATCTTTGCCACCACTTGGAAGTCATGCTCTCTTTTTGTCATCCTTCTGTAGGAGCTGCATTCAGCTTGGACCAATCGCAGGTTTCTCTTTGCGTGCTCTCACCATAATTGTTATAAACATTGAgctttttgcaggaaaatgttATATGCATGCAGGAGGTCACTTATTTCAAGACAGATTTGAGCATTAGGTATTGTGAGTGATACGGTTTCTATGGAAACTAGCAAATCATAGCATTTTCCCTGAATCCATCTTCTAAATTAGTAGTGCTTTTAGGatgatatataaaatacatatatgaactAAAGCATGACCTTGAAATCATGGCAATACTCCATCATATTTTTTTAGACCGTACtcagtaaaatacttttttgtttgtttgtttgcacattttgtgttattcaGTATATCTGTATTATATGCAAAAGTACTTTGGAACTGTCTGAATTTGCATGCTTCCAAATATGACACACGAAGCCAAGAATTGGTATGTATGGTATATTGGTATATTTGGAAACTCACACTGCTTGTTTTTGTcaatattgtcaaaatgtatctgtaaaaatattttaaacagctctcaagatacaataaaagcactgaaagatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70770 lncRNA upstream 147820 36476438 ~ 36479375 (+) True G56623
TU70730 lncRNA upstream 592500 35948851 ~ 36034695 (+) False G56584
TU70728 lncRNA upstream 675213 35927372 ~ 35951982 (+) True G56584
TU70726 lncRNA upstream 701000 35925938 ~ 35926195 (+) True G56582
TU70711 lncRNA upstream 756155 35870828 ~ 35871040 (+) True G56567
TU70862 lncRNA downstream 243264 36875078 ~ 36875398 (+) True G56698
TU70857 lncRNA downstream 268479 36900293 ~ 36975061 (+) True G56694
TU70891 lncRNA downstream 397392 37029206 ~ 37029542 (+) True G56712
TU70929 lncRNA downstream 556754 37188568 ~ 37188778 (+) True G56747
TU70938 lncRNA downstream 561912 37193726 ~ 37195088 (+) True G56754
AMCG00009381 mRNA upstream 15266 36576217 ~ 36611929 (+) True AMCG00009381
AMCG00009379 mRNA upstream 81478 36528946 ~ 36545717 (+) True AMCG00009379
AMCG00009380 mRNA upstream 111469 36515194 ~ 36515726 (+) True AMCG00009380
AMCG00009378 mRNA upstream 210192 36410058 ~ 36417003 (+) True AMCG00009378
AMCG00009376 mRNA upstream 420697 36205885 ~ 36206498 (+) True AMCG00009376
AMCG00009386 mRNA downstream 59019 36690833 ~ 36698116 (+) True AMCG00009386
AMCG00009387 mRNA downstream 72475 36704289 ~ 36731243 (+) True AMCG00009387
AMCG00009392 mRNA downstream 277282 36909096 ~ 37086094 (+) True AMCG00009392
AMCG00009393 mRNA downstream 454703 37086517 ~ 37087593 (+) True AMCG00009393
AMCG00009396 mRNA downstream 501415 37133229 ~ 37145082 (+) True AMCG00009396
TU70668 other upstream 1237868 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 2595750 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 2608380 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 4461830 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 6631757 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 728287 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 978529 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1810441 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2803086 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 3316192 39948006 ~ 39949200 (+) True G57430

Expression Profile