RNA id: TU70857



Basic Information


Item Value
RNA id TU70857
length 511
lncRNA type sense_over
GC content 0.30
exon number 2
gene id G56694
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 36900293 ~ 36975061 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTTAGAGCAAatccactttattttatttaatttttttttccataacaGCAAGAATCAAATATAAGCAGGAATAATAAAATTAGCATAAAACAAATTGCAGCAGACAGAGTACATTATTTTAGCAACTACAAGCAAAAAGTAAGTTCTTTGATTACACAACAGTAAAAAATCCAAGAAGCTGGCCTTTCAGCAGATGAAGGTTTCTGTTTGCAATAATATAACAAGCATTACCAAGTTATAAGACTGTTGGATATGAATAGCGGGTTAAGGGAAAAAACAAGAACTTTGGCTCTTAAAGTTGTATGTGTTCTTATAACCCTAGATGTTGGTGAGAAGTAGATTTGACCAgactctgttttgtttcctgtttgtttgtattactTAATTTCATCTGCTAAAAGTACAGtttacaacagaaaacaaattaatgtgaACACTAGAGCTATGATGTGCCTTTTTGAACTTTGAATTGGTGAAagagaatattttaattattgttaaaaataatta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU70862 lncRNA upstream 24895 36875078 ~ 36875398 (+) True G56698
TU70776 lncRNA upstream 268479 36627195 ~ 36631814 (+) True G56629
TU70777 lncRNA upstream 268479 36627195 ~ 36631814 (+) False G56629
TU70770 lncRNA upstream 420918 36476438 ~ 36479375 (+) True G56623
TU70730 lncRNA upstream 865598 35948851 ~ 36034695 (+) False G56584
TU70891 lncRNA downstream 54145 37029206 ~ 37029542 (+) True G56712
TU70929 lncRNA downstream 213507 37188568 ~ 37188778 (+) True G56747
TU70938 lncRNA downstream 218665 37193726 ~ 37195088 (+) True G56754
TU70962 lncRNA downstream 310782 37285843 ~ 37291665 (+) True G56775
TU70966 lncRNA downstream 318842 37293903 ~ 37297002 (+) True AMCG00009404
AMCG00009387 mRNA upstream 169050 36704289 ~ 36731243 (+) True AMCG00009387
AMCG00009386 mRNA upstream 202177 36690833 ~ 36698116 (+) True AMCG00009386
AMCG00009381 mRNA upstream 288364 36576217 ~ 36611929 (+) True AMCG00009381
AMCG00009379 mRNA upstream 354576 36528946 ~ 36545717 (+) True AMCG00009379
AMCG00009380 mRNA upstream 384567 36515194 ~ 36515726 (+) True AMCG00009380
AMCG00009393 mRNA downstream 111456 37086517 ~ 37087593 (+) True AMCG00009393
AMCG00009396 mRNA downstream 158168 37133229 ~ 37145082 (+) True AMCG00009396
AMCG00009401 mRNA downstream 209563 37184624 ~ 37192497 (+) True AMCG00009401
AMCG00009399 mRNA downstream 217444 37192505 ~ 37206412 (+) True AMCG00009399
AMCG00009402 mRNA downstream 240970 37216031 ~ 37216975 (+) True AMCG00009402
TU70668 other upstream 1510966 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 2868848 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 2881478 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 4734928 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 6904855 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 385040 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 635282 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1467194 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2459839 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2972945 39948006 ~ 39949200 (+) True G57430

Expression Profile