RNA id: TU70929


Basic Information

Item Value
RNA id TU70929
length 211
lncRNA type intronic
GC content 0.40
exon number 1
gene id G56747
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37188568 ~ 37188778 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACATTAGAGGTAGGTTATGTGTTGCTGGGGGTCAGTTTAGGGAAATGAAACTCTAaaagtaacacaaaacaaattgctttcTGAGCAGACACTGGCGTCAAACAGAACAGCTTAGCAAATGCACATGCAAATCAATCAGCAGCTCTGTTTAATACACTCACAAATGTTAACACTTCGATTTCTGTAAAAGTCGCCTTAACCTATGTCtggc

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70891 lncRNA upstream 159026 37029206 ~ 37029542 (+) True G56712
TU70857 lncRNA upstream 213507 36900293 ~ 36975061 (+) True G56694
TU70862 lncRNA upstream 313170 36875078 ~ 36875398 (+) True G56698
TU70776 lncRNA upstream 556754 36627195 ~ 36631814 (+) True G56629
TU70777 lncRNA upstream 556754 36627195 ~ 36631814 (+) False G56629
TU70938 lncRNA downstream 4948 37193726 ~ 37195088 (+) True G56754
TU70962 lncRNA downstream 97065 37285843 ~ 37291665 (+) True G56775
TU70966 lncRNA downstream 105125 37293903 ~ 37297002 (+) True AMCG00009404
TU71031 lncRNA downstream 271264 37460042 ~ 37463505 (+) True AMCG00009415
TU71098 lncRNA downstream 359535 37548313 ~ 37553141 (+) False AMCG00009429
AMCG00009396 mRNA upstream 43486 37133229 ~ 37145082 (+) True AMCG00009396
AMCG00009393 mRNA upstream 100975 37086517 ~ 37087593 (+) True AMCG00009393
AMCG00009392 mRNA upstream 102474 36909096 ~ 37086094 (+) True AMCG00009392
AMCG00009387 mRNA upstream 457325 36704289 ~ 36731243 (+) True AMCG00009387
AMCG00009386 mRNA upstream 490452 36690833 ~ 36698116 (+) True AMCG00009386
AMCG00009399 mRNA downstream 3727 37192505 ~ 37206412 (+) True AMCG00009399
AMCG00009402 mRNA downstream 27253 37216031 ~ 37216975 (+) True AMCG00009402
AMCG00009403 mRNA downstream 28308 37217086 ~ 37234594 (+) True AMCG00009403
AMCG00009397 mRNA downstream 55455 37244233 ~ 37249694 (+) True AMCG00009397
AMCG00009400 mRNA downstream 65161 37253939 ~ 37261404 (+) True AMCG00009400
TU70668 other upstream 1799241 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3157123 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3169753 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5023203 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 7193130 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 171323 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 421565 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1253477 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2246122 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2759228 39948006 ~ 39949200 (+) True G57430

Expression Profile