RNA id: TU70938


Basic Information

Item Value
RNA id TU70938
length 1363
lncRNA type intronic
GC content 0.33
exon number 1
gene id G56754
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37193726 ~ 37195088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggtcaaacacagtattagtatggtgttcctaataatcctttaggagAGTGTACAATGATTGCAAGCTATAGGACAAACCTTATATAGCTAGTGGTGGCACAGGAAGAGCAGATGAGCACACATGGGGGATTCCAGTTCATTGAAGCTTCACTGAAAAGGAAGCAAGTTCAGACAGACCGTAAATAGGACCGATATCAAAATAATACCCCTCTCCACCTCCCACAGGTTCTGTTTTCATAGTTGTCTGAATTCAGAACAGGGGGGGCTAGGTGATACTTATAATTATCAATGGTAGATTGGCAACCAAACTTTTACCTAAAAATagatttacttttatatttgtaaCATGGCGAGGGCACTGTCCAATTACACCACCCTGTGGGTCCCCTAAATCCACTTCTGCAATGCCTTCCTCGGGATCTTTTAACCAGTTAAGTGAGCGCAGAAATTTAAgttcacataaaacaatatattcatgtaaatacaattcatgtaaatacaaatcatacaaatacaatcaataaaatacagaacagagcCCTACAATTAAAAGAGTCTTCTACTCACAATCACACAAGTAAAGTGCAGGAGAGAGCAGGAAAATAAACTAGAAAAATCTAAACTAAACAGGAGTTTTATACTAAAGCAAAAAGCTGTTCCCAATTTtccaattaacaattaaaaggtTTGCTTGTTAGGACAGACTGGGGAGGGGAGATCATCTAgtgaaataaagcacaaaataaaccatGGAATGAActaaagtgaataaatacaaaactaaaaaactgaaaCCATTCAAACAGAAAAACTTAATTATAACCCtgttagatatttatttatttatgttctcatttaatatttttaaatatttaagaaatgtgtaaaatgcttGGATTTTAAATTATGCTTCTTATTTCAAGTGTGCCTTAAAGattaaatgtatcatgtatGTTTGGGTGGGGGGGATCTTGCATTACTTTActtctgttttcattctttgtAGTATGTTGGTCTGAGAATAGGTATGTACACAGAAAAGTACAAATACGTTTAAAGTAAGAAATGCATGAAGCAGAATTGATTGTATACACGTGCCTGCTATATAAACAACTGAAGCtgaggaaattaaatgcatatatatttcattaaccTTTTATAGTTGTTATTCTCAtcgttgtattttgtttcctgtgtaaTTGGTAACTCAGGAAGTCGAGCTCTAGaaaatggatttgttttggttatttaaaCTGCTTAATTATAGTACTGTAAATGTTCAACATTTTCTGATATTTGTAATAACACATTGAACATACTTATGTAACAAAACTGTAGACAGTACAGCAATAAAGCAGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70929 lncRNA upstream 4948 37188568 ~ 37188778 (+) True G56747
TU70891 lncRNA upstream 164184 37029206 ~ 37029542 (+) True G56712
TU70857 lncRNA upstream 218665 36900293 ~ 36975061 (+) True G56694
TU70862 lncRNA upstream 318328 36875078 ~ 36875398 (+) True G56698
TU70776 lncRNA upstream 561912 36627195 ~ 36631814 (+) True G56629
TU70962 lncRNA downstream 90755 37285843 ~ 37291665 (+) True G56775
TU70966 lncRNA downstream 98815 37293903 ~ 37297002 (+) True AMCG00009404
TU71031 lncRNA downstream 264954 37460042 ~ 37463505 (+) True AMCG00009415
TU71098 lncRNA downstream 353225 37548313 ~ 37553141 (+) False AMCG00009429
TU71111 lncRNA downstream 416167 37611255 ~ 37616696 (+) True AMCG00009428
AMCG00009401 mRNA upstream 1229 37184624 ~ 37192497 (+) True AMCG00009401
AMCG00009396 mRNA upstream 48644 37133229 ~ 37145082 (+) True AMCG00009396
AMCG00009393 mRNA upstream 106133 37086517 ~ 37087593 (+) True AMCG00009393
AMCG00009392 mRNA upstream 107632 36909096 ~ 37086094 (+) True AMCG00009392
AMCG00009387 mRNA upstream 462483 36704289 ~ 36731243 (+) True AMCG00009387
AMCG00009402 mRNA downstream 20943 37216031 ~ 37216975 (+) True AMCG00009402
AMCG00009403 mRNA downstream 21998 37217086 ~ 37234594 (+) True AMCG00009403
AMCG00009397 mRNA downstream 49145 37244233 ~ 37249694 (+) True AMCG00009397
AMCG00009400 mRNA downstream 58851 37253939 ~ 37261404 (+) True AMCG00009400
AMCG00009395 mRNA downstream 67463 37262551 ~ 37266023 (+) True AMCG00009395
TU70668 other upstream 1804399 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 3162281 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 3174911 34015670 ~ 34018815 (+) True G56369
TU70069 other upstream 5028361 32161760 ~ 32165365 (+) True G56060
TU69474 other upstream 7198288 29995126 ~ 29995438 (+) True G55591
TU70945 other downstream 165013 37360101 ~ 37367671 (+) True AMCG00009405
TU71113 other downstream 415255 37610343 ~ 37616283 (+) False AMCG00009428
TU71381 other downstream 1247167 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 2239812 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 2752918 39948006 ~ 39949200 (+) True G57430

Expression Profile