RNA id: TU70983


Basic Information

Item Value
RNA id TU70983
length 792
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G56795
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37201032 ~ 37267831 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCATACATCCAGAGCGCACTACCAGGAATACCgcatcccatcatgcttcacgGTCGGCCGACGTTCCattcaatgtggaaaataaatggcGGACAAATCTACCGATGAGGGAAGCTCTCTGGAATTCAAATGAGGTTTCAGATCAAGGCTGGTGTATTTGTGAAGAGATCCGAATATGGACCCTTTGAGCGACATTTGTGTAGAAGGACGGTTGTGTCTTGCCTCAGTGACTGTTAGGAAGAAGGAGcaaagGCCCCCTCTGAGGAAGTCTGACGAGGCACAACCCTCCTCCGAGGCTCCCCACCACGGAGGgccaacggggcatccacacccaaggtctgacaaAGCATCATCACCCAAAGGCTGTGGATGgttcaacccccccccacccctgattGCCAGCGAGAGGACTCCTtgagagggaagaccacagccagcagcacggatcaagaactttctgatctccatGCTGcagtaataactatactgcctggagcagaggcaaccattaggcctaggccctaagccatagacccccagagatttattttccctacatgccatccataggagttttttgtttttctctcctccgtgcctaaatggtttatttatttaaatgttaatttactttattttagatcatgtaaactgtttaaaggtctgtttttgttttactttattgtattatttatgtattttattttgctgtatgtttgttgtatgtttaccagtctggaAAGCgttctgtggctaccctgcgaagggcgctatacaaataaaaattgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70924 lncRNA downstream 32788 37167994 ~ 37168244 (-) True G56742
TU70874 lncRNA downstream 329209 36869548 ~ 36871823 (-) True G56710
TU70758 lncRNA downstream 807514 36096808 ~ 36393518 (-) True G56612
TU70757 lncRNA downstream 1095613 36080635 ~ 36105419 (-) True G56611
TU70714 lncRNA downstream 1311350 35889450 ~ 35889682 (-) True G56570
TU71004 lncRNA upstream 12912 37280743 ~ 37281091 (-) False AMCG00009409
TU71005 lncRNA upstream 13387 37281218 ~ 37285365 (-) False AMCG00009409
TU71007 lncRNA upstream 26061 37293892 ~ 37297002 (-) False AMCG00009408
TU71009 lncRNA upstream 26061 37293892 ~ 37394988 (-) False AMCG00009408
TU71014 lncRNA upstream 32713 37300544 ~ 37367669 (-) False G56818
AMCG00009394 mRNA downstream 103705 37088783 ~ 37097327 (-) True AMCG00009394
AMCG00009390 mRNA downstream 279893 36900293 ~ 36921139 (-) True AMCG00009390
AMCG00009391 mRNA downstream 326303 36873672 ~ 36874729 (-) True AMCG00009391
AMCG00009389 mRNA downstream 360695 36840116 ~ 36840337 (-) True AMCG00009389
AMCG00009388 mRNA downstream 433312 36733179 ~ 36767720 (-) True AMCG00009388
AMCG00009407 mRNA upstream 7631 37275462 ~ 37277549 (-) True AMCG00009407
AMCG00009411 mRNA upstream 11055 37278886 ~ 37279752 (-) True AMCG00009411
AMCG00009409 mRNA upstream 12717 37280548 ~ 37285304 (-) True AMCG00009409
AMCG00009408 mRNA upstream 17745 37285576 ~ 37297182 (-) True AMCG00009408
AMCG00009406 mRNA upstream 32697 37300528 ~ 37305420 (-) True AMCG00009406
TU70712 other downstream 1328435 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1661222 35538887 ~ 35539810 (-) False G56546
TU70686 other downstream 1661222 35538887 ~ 35539810 (-) True G56546
TU70688 other downstream 1661222 35538887 ~ 35539810 (-) False G56546
TU70552 other downstream 2921852 34239484 ~ 34279180 (-) True G56438
TU71449 other upstream 1312454 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1567485 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2880894 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5401296 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 6214590 43482421 ~ 43945297 (-) True G58333

Expression Profile