RNA id: TU71014



Basic Information


Item Value
RNA id TU71014
length 983
lncRNA type read_through
GC content 0.31
exon number 2
gene id G56818
representative False

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 37300544 ~ 37367669 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGATCTGGTTGGAATAAATTTATTGATCTGTCTGTAAACAAGGTGGTTTATCAAtttatggcatttttttttttaatgcatattaaatCAGATGAGTTAGACTGTATCCCagatgcaagaaagaaaaaagtgcagGGAAAGAAATGAACATAAAAATCAGCAACAAGGTTTGTTTAATCTGTACAAATTCCACAAGGCCTGAACATTTTGAGTTTGCACTAAAATATCCCTAAGGAAGTGCCATTCAAATTACTCCTTTCTGGGCAGCCAACATCATCCATCTCACAATAGCAACAGATCATCTCTTACATTATGGCACAGGATACATAGATTTTGTATTAAGTTTTCCACAAGACAACCAAGTTTTCTTATTCCAACCAATACCATCtcccatttattttgtgtttacagaGTTACTTTTcagggtctttttttttttttttttttttttttttttttttttgggcggGGAAAAAAGCTGTGAAATTGTTCAACCTACTTTGTAACCAAAGATGCAAAGCTGtgtaattcaattttattttgtaatgcacactctatatgtatttttagttttgttactttttccttcacaacaaaaaaaatcttttgtTGCTGTTTAGCATGTTCTGCATGATCTGTAATCTTCAAACCACTTTCTTAcctcatgtttttattcagcaCTCTTATTGTAACATAAAGTAGTCTGTGAACAATGtcaatgaaaaaagaaaagagaaaaacagaacgAAGAGCTGGCGTTGATGGAGAAAAACCTAGTGTTGTACACACTAGTTAGAGAAATGAAGTGAGCCatcttttgttcatttaaatggTGTTTTGAATTTCATATGCAGAAAAAAGTTTTGTTACATTGcaaattttaatgtatttaataaatgcaacattCAGATTCCAAGTGTAGTGTACACTGAGtatttaaatgagaaacattgtacatttcaaaaatacGAATGGAAACCAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71007 lncRNA downstream 3542 37293892 ~ 37297002 (-) False AMCG00009408
TU71005 lncRNA downstream 15179 37281218 ~ 37285365 (-) False AMCG00009409
TU71004 lncRNA downstream 19453 37280743 ~ 37281091 (-) False AMCG00009409
TU70983 lncRNA downstream 32713 37201032 ~ 37267831 (-) False G56795
TU70984 lncRNA downstream 74542 37201032 ~ 37226002 (-) True G56795
TU71032 lncRNA upstream 50745 37418414 ~ 37422521 (-) True G56831
TU71046 lncRNA upstream 99604 37467273 ~ 37469308 (-) False AMCG00009417
TU71067 lncRNA upstream 148300 37515969 ~ 37517654 (-) True G56861
TU71165 lncRNA upstream 269036 37636705 ~ 37734188 (-) True G56927
TU71208 lncRNA upstream 538736 37906405 ~ 37907571 (-) False AMCG00009437
AMCG00009408 mRNA downstream 3362 37285576 ~ 37297182 (-) True AMCG00009408
AMCG00009409 mRNA downstream 15240 37280548 ~ 37285304 (-) True AMCG00009409
AMCG00009411 mRNA downstream 20792 37278886 ~ 37279752 (-) True AMCG00009411
AMCG00009407 mRNA downstream 22995 37275462 ~ 37277549 (-) True AMCG00009407
AMCG00009394 mRNA downstream 203217 37088783 ~ 37097327 (-) True AMCG00009394
AMCG00009417 mRNA upstream 99585 37467254 ~ 37476035 (-) True AMCG00009417
AMCG00009422 mRNA upstream 157862 37525531 ~ 37528188 (-) True AMCG00009422
AMCG00009426 mRNA upstream 163054 37530723 ~ 37535894 (-) True AMCG00009426
AMCG00009423 mRNA upstream 169852 37537521 ~ 37543355 (-) True AMCG00009423
AMCG00009425 mRNA upstream 176570 37544239 ~ 37550476 (-) True AMCG00009425
TU70990 other downstream 80468 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 1427947 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 1760734 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 1212616 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 1467647 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2781056 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 5301458 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 6114752 43482421 ~ 43945297 (-) True G58333

Expression Profile