RNA id: TU71241


Basic Information

Item Value
RNA id TU71241
length 4322
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G56982
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38063790 ~ 38068153 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCatcaagttttgattttattgaaCTCTAATGCCATAAGAAAGCAGCACCATGGGTTAAGTTGTGCCATCGTTTTTTCAGGTTTTACCcgattgatttttttaaataatactgcTGACACAGAGTATTTAGGACACACAGCATTAACTATGGATCTTGCCTTCAATGAAGGTGTGGAGAAACACTGAGTAGTAAAGCATTTCTAATGGCAAATTTGCAGGTAGAAGACTCATTTgtcaataaataagaaataaaactggCTAGCTTTTAATTTGACTActtgtgggattttttttttttttaataaaacaagattGGCACATTGccatttgcaaaaacaaaaagagaaaagaaaaacagatgaaaTTACCTTCCttcatcaaattaaatgaaaaacaaacagaaaaaatgaacaCTATACTACTTAACTTGTACAACTTAAACGACCAAATGTCAACTTTCAGTGCATGTGCAGAtaatataacaaacaaaatggtattgtaaaacaaaaaggtaagcTATAAGTTACCCAGCACTTACAACCCAGCAAGAGAAATGCCAAGATCGAGAGAAGACTGTCTTGCATCACTTTGCCCTCCAAAGTATCTACAGTGCTACCAGCAGAACTAGGAGGCAAAGAagtaaaagagaaagaaagaaaaagaaaagaaaattcagGAGACGGTCGGTACATTGGTAAGGAAAGTTTGAGTGAAGAACCGAGAGAGGAATCCTAATAAAGcgagagcagagagcagagagagagcagcagtaGGACTTGCATAGTAACCACAGTATTTCCAGTTTAAGTGCATAGACCGTGCGGGTagccagaaaacaaacaaaaaacctcaGAGACATGAAAATTACAGCAGAATAGGATTTGGTGTTGATAGCCAGCTATACGCTTCAGAACAATTGACAGAAGGTGTGTAAAGGATTAATTTGACACAACAGACAGCAGCCATCACTGCACAAATCGTTCCAGTTCAGAAACTGGCTTCTGTAATCAATACTATGACATTCGTATATTATTTAGTactcagaagaaaaaaaaaacagtaccaGCTAACAGAGAATACAGTTTCTACAGTGCGTTCAGTCACTAGAGCGCCAGGCGTTATCTTATCTATATATTGCACCTCACGCCTACATTGGGATTTCATGCAACGCCTCCTTTCAGACTGTGCCGTATCACAGCTGGGGAAGAAGTTTGCCAGttcccttatttttttaaataataaagctttGCATAAACCCAAAATGCGATTTACTTTCTTTATGATATGGTAAGTCAGTGTAACAAATACAACTTTAGAAAAATATCTATCAATGGTTACAACGGCATATATGGTTGGTGAATCCAGTTAGCGATGTTTCTTGATTTGTTCTAATCAAATCAGtccattttcaaaaaaataaaaaacttgatGTAGAGCCTTTTCATCGAAAGCACATCAAAGTTTGCCTGCAGCTCTGAGCACCATTAGGAATACATTCGTAGTGTGCTGGAAAAAACAagtaatatcaatttaattctGGAACCAAAAATGAAAGCCATTGGCTGCATATTTTTaagtgaataaaaatacattgtttcaacCTTATGGGACAACCTTACAGGTGACTTAGACATTACAGCTTATGTaggacatttaaacaaaaaacaaacatctgtacaGGTTTGTCTGGGGCACACAGTGCTGGAGGTTGAAAAAAGAAAGGTATCCTTGCTTGAAAGTGTGAGCATCTGCCCCTTTGATATTGCTTGCGCTGACAGATGTTCGGACATCTGTTTCCGAAAGCTCCGGCTTCAGACCTCTGAGAGCCAGTGCTGAAGACACAGGTGTCACTTCACATACCATGGGGCCAATACAGCACACCCCTCTGTCATCTCCCATACAttcatttacctttttaaatgcataacatCGGGGGATTCTAAAACGCCAACATCTTCAATAATATTCAACCTCCAAGTCATCACAGACAATGTGATGGCCGGAGCCTAACCATTTGAGCAGGACTTGCAGTCTCGGTCAATAAGGCTGTGGGAGGGGGCACAACTCCACTTCTCCAGGGTCCTTTGGTTTGTCTTTTATTTGCAGATCTTCACTACTGTATTGAACTAATCCAGGTAATAAGAACCAGATACTAAATCAGTCACTAAATGAAAAGGTACTTTTAAACCTGAAGGAAATGGTGTCTCTGAGAAACGTACTGAACTTCGTTAGTAAAAACAAACTTGATTAAGTTATTTTCTCCACCCAACTGTGAATATTAAAGcaaaatttaagaaaatgtcagtgaaaaacaaatactgatgAACTCACATGATCAGAATTGATATTACAGGCATAAAAGATGCAGCCCCTGCGAAGCCGTACAAGCTCACGACACGAAGCAACTCATCTGCATCGGTTTAGTGTGATAAGCTGGTGCATTATACACTATGAATTTGGTTTCTACAGtcatgtactgtatatagtCTAAGGAAGCCATTTTActtgtcattattattacagtgtgATGTCTCGTAGTTCGCATTGCTCGGTTTGTATCTAGAAGAACTGGACTCTCACTATCTGCACTATCACTTCCATGGATTTGTACAAAAAAATTCTGCTTAAGCGGATTTCACTAACAGTAATCATTTTTCATTGTCATCATTGGcattttgtgatgttttgaCATAAATTGAAACAATGCTTGCATTTATAAAGGAATGGGGCAGGGGTTACGGTCATATATGCGAtctctgatatatatatatatttatttttttatttttttacaaaaagaatatatttagttttagatttaaagtgcttttatgaaactaaaagaaaaagtattttaaatgatacTGCATCAAAATGTTTTGAGCTGGTTTTGTTCTATATGATAAAGAAAACCAGGCACTAAGACAGGCTTTATGAAGGATCCCATGGCATCACACCCCCTGCTCTGCAGAGCCACTGGCGAGAATGGCCTGCGACACTAATCTCTCCGATTCCAGCATGGCAGGCAACCCTGCAAGGAAGAGCAACGGCCCCAtgggacactacagcacagagtTCTGGGAGATTCATTCTCTGCAGGCGCGACAACGCGGAAAAAAATCAACCGTACCATCGACTCCCGTTTCTACAGATGCCAGACCTGTTCAGATAGTGTAAATCAGAATTCGGCTTTAGGCCGCAGATCTAGAAGTTTCGAGGTTGCGTGAAAAGTGACAGCCCTCGCGTTCTACTTTGTTCTGCCTTTTAACTTCCCCAGTTTTGTCAATGTTCAGTGGTGGTGACCAATACATCCCTCAATTCACACCTTCACGTCTGCCATTTCAAAAGGCACATTAGACAGACGCCAAACAAGATGCAACCCTTGGGCTCAACTTTTTGGTTCTGCTGCTGGAAGTGTGTTGATGCAAGAGTCTTGGTTTAggcattttcttccatttccgCTTAATCCGCCATCTCAGTAACGGGACAGTGCTTTAATAAGACAGATTTAAAGCCCAGATTTAAATACTCCATCCTTTCTGGCACCAGTCACCTCTTCTAAGGAGAGGTGTGGGCGTGGCAGCGGAGTTCCATTACATCCCGTCCCGTAGAGAGACTGTCTCATCACCCGGTCCGAATGGACCACACACTGCGCCCCAGAGTCTAAGACCCATTCTATCCTCAGATCAGGCTACTACTTATTTGCTTGCACCATTATGGATCATAATACTTTAACTCTGCGGCTGTTCATGAAAATATCAAACAGTTAACCTGCAAAATGAAGAGTCTATTTctataaaaaagataaaaggcaTAGGAAAACAAACCCGCTTGCAGCACTCTCGCACCCCCTcaccccaaaaaacaacaaaatctgaTATGTAAAATGCTGTGCTATCGTTTTCAGTAACTAAACTGCACACCTCTCTTCTCTACCTCTACCTCTGACAAATGAAGAACTCACAACGAACATTCAATGAAACCAAAGGATTTTCCTCTTGAGCCAGGCTTGATGGGAGTGATGCTGCCATCTTCTGATATCTTGCTGGATCCACGTCCTTAGTCTTCCCTTTAGCATTTGTTTAGTCTGTCTAGtggatttctttttctttttcttgtttctccCCCGACCTCCCCAGCTAGAAAAGGATGTTTCTACAGCTACAGGCCTCCCGCCTAGCTGCGTGGTATCTGGTGATAAAAGTAGATGTAGCCCAAGTCCTTAGGAGGCCTTTCCGACAGGCACACTTTATGGTCGTTGTAGATCACCCATCTGGAAAGGAAGCGAATGCCATGGATTTCAGTAAAACCGTGTCCTG

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71111 lncRNA upstream 447094 37611255 ~ 37616696 (+) True AMCG00009428
TU71098 lncRNA upstream 510649 37548313 ~ 37553141 (+) False AMCG00009429
TU71031 lncRNA upstream 600285 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 766788 37293903 ~ 37297002 (+) True AMCG00009404
TU70962 lncRNA upstream 772125 37285843 ~ 37291665 (+) True G56775
TU71255 lncRNA downstream 61929 38130082 ~ 38133966 (+) True G56995
TU71304 lncRNA downstream 134641 38202794 ~ 38280479 (+) True G57036
TU71462 lncRNA downstream 559766 38627919 ~ 38628135 (+) True G57161
TU71465 lncRNA downstream 564944 38633097 ~ 38633351 (+) True G57164
TU71480 lncRNA downstream 689227 38757380 ~ 38834945 (+) True G57175
AMCG00009438 mRNA upstream 4517 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009427 mRNA upstream 442400 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009428 mRNA upstream 450895 37608305 ~ 37612895 (+) False AMCG00009428
AMCG00009429 mRNA upstream 458666 37530822 ~ 37605124 (+) True AMCG00009429
AMCG00009419 mRNA upstream 542337 37520323 ~ 37521453 (+) True AMCG00009419
AMCG00009444 mRNA downstream 24247 38092400 ~ 38094123 (+) True AMCG00009444
AMCG00009443 mRNA downstream 57155 38125308 ~ 38129404 (+) True AMCG00009443
AMCG00009442 mRNA downstream 79822 38147975 ~ 38150946 (+) True AMCG00009442
AMCG00009449 mRNA downstream 126694 38194847 ~ 38206084 (+) True AMCG00009449
AMCG00009450 mRNA downstream 138831 38206984 ~ 38241384 (+) True AMCG00009450
TU71113 other upstream 447507 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 696119 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2674463 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 4032345 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 4044975 34015670 ~ 34018815 (+) True G56369
TU71381 other downstream 374102 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1366747 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1879853 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 2034230 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2922649 40990802 ~ 40994659 (+) True G57604

Expression Profile