RNA id: TU71255


Basic Information

Item Value
RNA id TU71255
length 3885
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G56995
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38130082 ~ 38133966 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAATACCGGAAGTGTGTCTTTGGTGATTTCTATTCAGTATTAATCGGCAGCCCCTAGCAAAATACAGAAACGAATTCCAAACGAATGACAAATCAGTGACTTTGTGAAAACGGTATTTTTACTCCCTGGATATGGTCGGTCAGCGATTTGCAGTGTTCACATTAGACGCGACGGGGACGgttctgtctgtgtttgcagtCCGATATCGCACCTTGAGTATTTACTTGAAAACAATGAAGGCGtgttattttatgaattaaCCATTTATAGACCAGTTTGTGCagactgccccccccccccccctgtacATGGTAAACAAGCCTGAAACGGGCAGTTGCTGAAAAACATTAGACGCATGTTGCGCAGAGGAGTGTCACTGTTCTGTGAACAACACGCTGCACCTAGACATTCATCTTCCAGTCTGCAGGCTCTGTGTCTCCACGTTTCTCCTTCCCATTGTGGCGTTGACCCCGACAGTGGTGGCCAGCAGCCCCCGCGCCCGGCCCGGTCTCCGCCTCCCAGCAGTGGACGCTTTGTGACTCGCCATCCTCGTCTGTTCCGAGCCCCCCCGGCCCACCCGTTTACAGAATTCAGAGCGAGGGGCAAAGACGACAGTGTGGCTGGGTTTTCAGTCAAACGTTGAGTTCTACTGTGGAAACGGCACCCCCTCCGACTCCCCCAACGCTGACATCTCGTGTCCTTTCCCCTCCGCCACCATGCTGCTGGGTAGCAGACATTCCAGCTGTAAATGCTTTCTTTCCTGATTGTCCGTGAGCGCCGTGTGCACGGTTttattcactcacacacaggcgTGTATACACGGGCGCACACGCATTTGAAGCAGTAAAGAATGACTAGCAAAGAATGCTTTGTACAGAGAACTAGAGAAATGCATGCAACAGTACTCCTAATGTAAGCACATTCAGACTTTTTActttaaaggtttttttttttattattatgatgatgatgatgatgatgggaGGCATCACTCAAGTTGTGTACCTGATACCAGTGTATTATAAAAAAGGCCTATCGCCAGTTATGCATATCGTGGGCCGTTGAAGCCGATGAGGGAGACGGCTGCTGCCCGGTGCCGTGCTCCGATCACGGGTCGGATAGCACAGGTGCTGAACCGTGAGGGCCCAACAACGCTCCCTTGCATCTCCATCCATTAGTGACCGATACGACCTCCAGTCCGAACACCGTGTGGCTCTCCCTCCTTCATTCACTCgcctcttctcttttttttttttccctctctcctctttaTAAAGTGGTCTGTATTTCACTGGATTGCGCCATAATTGccgaacccccccccccctctgcctTACTGCGGAGTAAAAGTGCCCGGGAATAGATGGCAAAGTCAGGCCGGTGCCCACTTGAAAGCGTGGCTCTTGGCGCGAGGCTGTCCCGCCGGCTGGACGAGGTGTTCGCCCTCCAGGCTGCCGCTGCCACAAGGGGAGTTACCCCGTCGTCTCGGCGCTCCCGCCCTGCAGCCAGCGCCCATGAAGTAAACCGCCTTTCTGATGTGCCAATCGACACGCCAACGAGCAGAATAGTATTTAAATAGAGCAGTGTTGAACGgaggaatgaatgaataaagtaAAGTATAGCTCTGGGACCAAATTTTAACTACAATGAAACACTAACGGAAGTATTGGTTGCAAAGCTTTTGTAGCATGTGCAAGAATAAGactgggttttttgtttttttttgttttttgatttgctttttgtttttttgccttgAAAAGGGGGTGACTGAATTGCAACAAACAACTTGAGGTTCAGGccactttttttctgtaaattattGTTGAATAGATGGATTACTTTCTACAGTTTAGTactaaaatgtttatgtatttattgattataaAGAATCCTTTTTACCAATATGTAGTGATTACGGTAGCCGTTTTCAGTTGTGCGTTTTAGCTGCATtacccctttttattttttttttaaacccctccctttcttttcctctccaaacagatttcagatatacatatattgacAATAGAATGTGGTTTTTACCAGAGAGATCCTTTAGATAACCGTGATGTAAGATGTATTGAAGTTCAGTGTTGAAAAATAATTCTTACTGTAAAAATGTGTggtcaagatttttttttttttttttttttactttgaggCTACATTTTGTGCCAAAATTACCCTCCAACATGGGAATAGATATTTTTCCCCTGTAACAGTTGCTCTGTCACTCATCCTTACTCACTCTGTGTTGTCCCGCTAACATGGAAGCGACGCTAACCCCAATGGGCAGTGCCCCTGATTGTCAATCGATTTGAACGTGGACGAGCAACTTGTTTTGCTCGTTTCCATGAGCTGCCCGACACGATACTGGTGCCTAGAAAACGAGTGCCCACTTCAGCCCAAACCGCTTGGTGCTTTCTATATACTTGTGAATACGAGTTCTGTTTCAATAATGTACACAAGtcattttgccattttattttgttgcttttttgaaATCCTGCTACCAAACCGAGCTGGATCCTGCATGTTTCACTGGAGTAGCTGTGTGTTCACTGGATATTGTCATTTTACTCCTGGTCGGtttgaactaaaaaaaaaaaaaaagaaaaaagaaaaaaaaatcgaaaaggcacatttaattaataaaaaggaagaaagaaactgaagtgttcattattttccttttaaacaaacactgcaCTGGTGTCAGTATAATCCGACGCCCTCCGTTCCCTCCCACGATATGGAGGACCAGGGAGGGCAAGATTGTGTGAAATGACTGGATCCGTCTGTAGACGCTGGCGAGATTGTCTCCCTGTGCAGCAAGCCACCGTGGTGTGCCTCGGTCCCGACCCAGGAAGGCAAAGGATGCGTTGCCTTGTTAAATAATGGCAGGCAATCACCGCAGCATTCTGGGTAAAAACAATAGGTATATAAATGCAACAGTATTAACGGTTTCCACACAACGGTATCACGCGTTGAATGTGCCTGCACACCGTACACAAGAGTTTGTGTCCAGAGCTGGGACAGAAGCCCTACAGGCCGAGAGAATATCCAAAAGTCGGTATTTTTAGCCTCTTCCCACCCCGTGACTTCACCAAGGCCCTCGGCTACCCTTCCGCGCCGTCGTTCGCAGAGGGTGACTTATTTTTGCCCACAATTCCCTTTAAATCAAGGACGTTCTTATCGACTGGATGAAAACCAATCTTGGCGGGTCTGAGTGACTAtcggtgtctctctctctcgcgcgcGCGTCGATACAGGGACCCAGTCTAGTGACCGGAAGGGCAAAGACAGCAGCCCCGAAGGCCGTCCTGTCCCGGCTCCGTGTCCCATCATTAGTGTTACATTTTCACCACGATATTGACACAGATTCAGTAAAAATGCACTGCCTTTTGGCTCTTGTATGTATTCCAACAAagtcttatttttcttaattatttttcagttcttGAGCCATTCAAAACCAGGGACTCGGTGCCATGCATTTCCTCTTACAGTGCTATTGTGTGAAGTAATTAATCACTTTGCTACAAGAACTTTTACTTCGttttttggtttccattttttttttcctcctccccccacttttttttcccccccctttCCTCCTTTGTATTTGTACAGTGGCTCGGTGATAACTGATATGTTGCCATGACTTGATATTGTAaccaataaaaaagaaaaagaaaaaaaaaaaaaaaagaaaaagcttttaacCAAGGCTGttgtgttctgtgtgttcaCTATGTTGAGAGATTGTAAGTTTATACTCTTCAGTGCAAATTTGTAGCAACAGAGCTTTTATAAGATTGTGAGTGATAGGTACACATGTAAGAATCCACATGCAAATAAACCACTAAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71241 lncRNA upstream 61929 38063790 ~ 38068153 (+) True G56982
TU71111 lncRNA upstream 513386 37611255 ~ 37616696 (+) True AMCG00009428
TU71098 lncRNA upstream 576941 37548313 ~ 37553141 (+) False AMCG00009429
TU71031 lncRNA upstream 666577 37460042 ~ 37463505 (+) True AMCG00009415
TU70966 lncRNA upstream 833080 37293903 ~ 37297002 (+) True AMCG00009404
TU71304 lncRNA downstream 68828 38202794 ~ 38280479 (+) True G57036
TU71462 lncRNA downstream 493953 38627919 ~ 38628135 (+) True G57161
TU71465 lncRNA downstream 499131 38633097 ~ 38633351 (+) True G57164
TU71480 lncRNA downstream 623414 38757380 ~ 38834945 (+) True G57175
TU71626 lncRNA downstream 1169371 39303337 ~ 39306230 (+) True G57286
AMCG00009443 mRNA upstream 678 38125308 ~ 38129404 (+) True AMCG00009443
AMCG00009444 mRNA upstream 35959 38092400 ~ 38094123 (+) True AMCG00009444
AMCG00009438 mRNA upstream 70809 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009427 mRNA upstream 508692 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009428 mRNA upstream 517187 37608305 ~ 37612895 (+) False AMCG00009428
AMCG00009442 mRNA downstream 14009 38147975 ~ 38150946 (+) True AMCG00009442
AMCG00009449 mRNA downstream 60881 38194847 ~ 38206084 (+) True AMCG00009449
AMCG00009450 mRNA downstream 73018 38206984 ~ 38241384 (+) True AMCG00009450
AMCG00009457 mRNA downstream 200082 38334048 ~ 38354970 (+) True AMCG00009457
AMCG00009456 mRNA downstream 333301 38467267 ~ 38474039 (+) True AMCG00009456
TU71113 other upstream 513799 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 762411 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2740755 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 4098637 34000796 ~ 34031445 (+) True G56368
TU71381 other downstream 308289 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1300934 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1814040 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 1968417 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2856836 40990802 ~ 40994659 (+) True G57604

Expression Profile