RNA id: TU71275


Basic Information

Item Value
RNA id TU71275
length 4672
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G57011
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38129295 ~ 38133966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTTTTTAGTGGTTTATTTGCATGTGGATTCTTACATGTGTACCTATCACTCACAATCTTATAAAAGCTCTGTTGCTACAAATTTGCACTGAAGAGTATAAACTTACAATCTCTCAACATAGtgaacacacagaacacaaCAGCCTTGgttaaaagctttttcttttttttttttttttctttttcttttttattggtTACAATATCAAGTCATGGCAACATATCAGTTATCACCGAGCCACTGTACAAATACAAAGGAGGaaaggggggggaaaaaaaagtggggggaggaggaaaaaaaaaatggaaaccaaaaaaCGAAGTAAAAGTTCTTGTAGCAAAGTGATTAATTACTTCACACAATAGCACTGTAAGAGGAAATGCATGGCACCGAGTCCCTGGTTTTGAATGGCTCaagaactgaaaaataattaagaaaaataagactTTGTTGGAATACATACAAGAGCCAAAAGGCAGTGCATTTTTACTGAATCTGTGTCAATATCGTGGTGAAAATGTAACACTAATGATGGGACACGGAGCCGGGACAGGACGGCCTTCGGGGCTGCTGTCTTTGCCCTTCCGGTCACTAGACTGGGTCCCTGTATCGACGCgcgcgcgagagagagagacaccgaTAGTCACTCAGACCCGCCAAGATTGGTTTTCATCCAGTCGATAAGAACGTCCTTGATTTAAAGGGAATTGTGGGCAAAAATAAGTCACCCTCTGCGAACGACGGCGCGGAAGGGTAGCCGAGGGCCTTGGTGAAGTCACGGGGTGGGAAGAGGCTAAAAATACCGACTTTTGGATATTCTCTCGGCCTGTAGGGCTTCTGTCCCAGCTCTGGACACAAACTCTTGTGTACGGTGTGCAGGCACATTCAACGCGTGATACCGTTGTGTGGAAACCGTTAATACTGTTGCATTTATATACCTATTGTTTTTACCCAGAATGCTGCGGTGATTGCCTGCCATTATTTAACAAGGCAACGCATCCTTTGCCTTCCTGGGTCGGGACCGAGGCACACCACGGTGGCTTGCTGCACAGGGAGACAATCTCGCCAGCGTCTACAGACGGATCCAGTCATTTCACACAATCTTGCCCTCCCTGGTCCTCCATATCGTGGGAGGGAACGGAGGGCGTCGGATTATACTGACACCAGtgcagtgtttgtttaaaaggaaaataatgaacacttcagtttctttcttcctttttattaattaaatgtgccttttcgatttttttttcttttttctttttttttttttttagttcaaaCCGACCAGGAGTAAAATGACAATATCCAGTGAACACACAGCTACTCCAGTGAAACATGCAGGATCCAGCTCGGTTTGGTAGCAGGATttcaaaaaagcaacaaaataaaatggcaaaatgaCTTGTGTACATTATTGAAACAGAACTCGTATTCACAAGTATATAGAAAGCACCAAGCGGTTTGGGCTGAAGTGGGCACTCGTTTTCTAGGCACCAGTATCGTGTCGGGCAGCTCATGGAAACGAGCAAAACAAGTTGCTCGTCCACGTTCAAATCGATTGACAATCAGGGGCACTGCCCATTGGGGTTAGCGTCGCTTCCATGTTAGCGGGACAACACAGAGTGAGTAAGGATGAGTGACAGAGCAACTGTTACAGGGGAAAAATATCTATTCCCATGTTGGAGGGTAATTTTGGCACAAAATGTAGcctcaaagtaaaaaaaaaaaaaaaaaaaaatcttgaccACACATTTTTACAGTAAGAATTATTTTTCAACACTGAACTTCAATACATCTTACATCACGGTTATCTAAAGGATCTCTCTGGTAAAAACCACATTCTATTgtcaatatatgtatatctgaaatctgtttggagaggaaaagaaagggaggggtttaaaaaaaaaataaaaaggggtaATGCAGCTAAAACGCACAACTGAAAACGGCTACCGTAATCACTACATATTGGTAAAAAGGATTCTttataatcaataaatacataaacattttagtACTAAACTGTAGAAAGTAATCCATCTATTCAACaataatttacagaaaaaaagtggCCTGAACCTCAAGTTGTTTGTTGCAATTCAGTCACCCCCTTTTcaaggcaaaaaaacaaaaagcaaatcaaaaaacaaaaaaaaacaaaaaacccagtCTTATTCTTGCACATGCTACAAAAGCTTTGCAACCAATACTTCCGTTAGTGTTTCATTGTAGTTAAAATTTGGTCCCAGAGCTATACTTtactttattcattcattcctcCGTTCAACACTGCTCTATTTAAATACTATTCTGCTCGTTGGCGTGTCGATTGGCACATCAGAAAGGCGGTTTACTTCATGGGCGCTGGCTGCAGGGCGGGAGCGCCGAGACGACGGGGTAACTCCCCTTGTGGCAGCGGCAGCCTGGAGGGCGAACACCTCGTCCAGCCGGCGGGACAGCCTCGCGCCAAGAGCCACGCTTTCAAGTGGGCACCGGCCTGACTTTGCCATCTATTCCCGGGCACTTTTACTCCGCAGTAaggcagaggggggggggggttcggCAATTATGGCGCAATCCAGTGAAATACAGACCACTTTAtaaagaggagagagggaaaaaaaaaaaagagaagaggcGAGTGAATGAAGGAGGGAGAGCCACACGGTGTTCGGACTGGAGGTCGTATCGGTCACTAATGGATGGAGATGCAAGGGAGCGTTGTTGGGCCCTCACGGTTCAGCACCTGTGCTATCCGACCCGTGATCGGAGCACGGCACCGGGCAGCAGCCGTCTCCCTCATCGGCTTCAACGGCCCACGATATGCATAACTGGCGATAGGCCTTTTTTATAATACACTGGTATCAGGTACACAACTTGAGTGATGCCtcccatcatcatcatcatcatcataataataaaaaaaaaaacctttaaagTAAAAAGTCTGAATGTGCTTACATTAGGAGTACTGTTGCATGCATTTCTCTAGTTCTCTGTACAAAGCATTCTTTGCTAGTCATTCTTTACTGCTTCAAATGCGTGTGCGCCCGTGTATACAcgcctgtgtgtgagtgaataaAACCGTGCACACGGCGCTCACGGACAATCAGGAAAGAAAGCATTTACAGCTGGAATGTCTGCTACCCAGCAGCATGGTGGCGGAGGGGAAAGGACACGAGATGTCAGCGTTGGGGGAGTCGGAGGGGGTGCCGTTTCCACAGTAGAACTCAACGTTTGACTGAAAACCCAGCCACACTGTCGTCTTTGCCCCTCGCTCTGAATTCTGTAAACGGGTGGGCCGGGGGGGCTCGGAACAGACGAGGATGGCGAGTCACAAAGCGTCCACTGCTGGGAGGCGGAGACCGGGCCGGGCGCGGGGGCTGCTGGCCACCACTGTCGGGGTCAACGCCACAATGGGAAGGAGAAACGTGGAGACACAGAGCCTGCAGACTGGAAGATGAATGTCTAGGTGCAGCGTGTTGTTCACAGAACAGTGACACTCCTCTGCGCAACATGCGTCTAATGTTTTTCAGCAACTGCCCGTTTCAGGCTTGTTTACCATgtacagggggggggggggggcagtctGCACAAACTGGTCTATAAATGGttaattcataaaataacaCGCCTTCATTGTTTTCAAGTAAATACTCAAGGTGCGATATCGGactgcaaacacagacagaacCGTCCCCGTCGCGTCTAATGTGAACACTGCAAATCGCTGACCGACCATATCCAGGGAGTAAAAATACCGTTTTCACAAAGTCACTGATTTGTCATTCGTTTGGAATTCGTTTCTGTATTTTGCTAGGGGCTGCCGATTAATACTGAATAGAAATCACCAAAGACACACTTCCGGTATTGGTTTCAGGCaaccagtatatatatatatatatatatatatatatatataaaaattacagtaatttacaCAAAGACTTGGGCTAACCTTTTCTGAATACATCACTAAGAAATTGTTTAAAAGCAACCAACTGATCAGTGACCAGAGTGTGACATTTCAGGATAATTAGAAGCTATAaatggaattatatatatatacatatatactgcatatgtatatattataacagTTTGTACAGATACATGATGTGATTGGTTACTATTATGTGTAGTCTGttatgtacaaaaaaacaatgagcaaaagcaaggaaataaaacaactaaTTAGGAGGTGGGCAAtaaagaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtaatatatatatatctatatgtaatatctatatagatatagatataaaacaatGACTGGCTCCTAGCTTCTTCGTCACCATGGTAAGATGCTAGCCCCTGTCAAAAGTCAGAGGATCACCAGGGTACAATTCTCGCTTCTTCATCTGATTTGGACTATGTACTGAAAGCTTTGTGTAGTAAGTGAATAGAAAAAACTTCACCCGGAAAGGTAGAAAGAAATGTTACTTTTCCCGTGACTGCCGGCTGCAGCAGTGACCCCCCGCCGCTGCACGGGGCGCCTGGTTGACCTCCGACCCCGCGGCCTGCTTAGTTCCAGATTCTGAGGAAACTGTCCCAAGATCCTGTGGCCACAGCCATGCCGTCATCCGTGACTCCTAAACAGCTCACTCGGTTGTCGTGGCCGGCCAGCACACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71282 lncRNA downstream 93 38128984 ~ 38129202 (-) True G57018
TU71281 lncRNA downstream 1617 38127468 ~ 38127678 (-) True G57017
TU71280 lncRNA downstream 1955 38125981 ~ 38127340 (-) True G57016
TU71279 lncRNA downstream 3932 38125149 ~ 38125363 (-) True G57015
TU71277 lncRNA downstream 10452 38118428 ~ 38118843 (-) True G57013
TU71435 lncRNA upstream 367152 38501118 ~ 38503129 (-) True G57143
TU71466 lncRNA upstream 499146 38633112 ~ 38633397 (-) True G57165
TU71506 lncRNA upstream 638460 38772426 ~ 38773951 (-) True G57194
TU71580 lncRNA upstream 947455 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 1446645 39580611 ~ 39588074 (-) True G57351
AMCG00009448 mRNA downstream 23502 38094973 ~ 38105793 (-) True AMCG00009448
AMCG00009447 mRNA downstream 37139 38089356 ~ 38092156 (-) True AMCG00009447
AMCG00009441 mRNA downstream 41171 38063826 ~ 38088124 (-) True AMCG00009441
AMCG00009439 mRNA downstream 175240 37942071 ~ 37954055 (-) True AMCG00009439
AMCG00009440 mRNA downstream 195650 37928306 ~ 37933645 (-) True AMCG00009440
AMCG00009446 mRNA upstream 117 38134083 ~ 38146947 (-) True AMCG00009446
AMCG00009445 mRNA upstream 21759 38155725 ~ 38176524 (-) True AMCG00009445
AMCG00009451 mRNA upstream 109241 38243207 ~ 38259816 (-) True AMCG00009451
AMCG00009452 mRNA upstream 132233 38266199 ~ 38271710 (-) True AMCG00009452
AMCG00009453 mRNA upstream 145285 38279251 ~ 38281530 (-) True AMCG00009453
TU70990 other downstream 909219 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2256698 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2589485 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 446319 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 701350 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2014759 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4535161 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5348455 43482421 ~ 43945297 (-) True G58333

Expression Profile