RNA id: TU71280


Basic Information

Item Value
RNA id TU71280
length 1360
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G57016
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38125981 ~ 38127340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAAATGGGACATTTTTCACGGGACAGGAAAGCACCCAGCATTTCCTCACCTTGTTTGTTGTGTAGCTGTCCCAGATAATTAGCTTGCCATCTTGAGAAGCACTGACGAGTAacctagaaaaacaaaaacacgaaGATATAGTGTTTCCGTCGTGAAGATACTGTAGTGCAGCTCATTTCCGTTCAATTCTGCAGGGGCCATGACTGCGCCTCACCTTGATCtatatatagtgccttttaAATGCAATCTCTCACCTCTGACATGGTGGTGTTTCATTGCCCATAAACGGCTCCTCAGGGCTTCAGTCAATTTCAAAAATGAGAGATATGGACATTTGGACCTACACTGAGTGGTGTGCGATTGCATTTTAGTACTATTCTGCGGTGATACTCAAGTCTCTCACACAGGGATCCTAGTTGTGCTGTTTCGCCCCCCTGTTCACTGCAGGCGGGGAAGTTACCTCATCACACCGGGCCATCTGCCGTTCAGGACCCCTGCTACACTGCTCCGGCAATTTCATAACTTATTCACGAACCACAAAATATTTCAACTCAGATAGTCGTCCAGCTTCAGGCAAAATGGCCTTCATAAATCCACAGTAATGCATCCACTCCGACtgcagccccccccaccccgatcCTAATGCCTTCCTCTTAAAAAGCACATCCGCTTGGATGTACAGCAAAACATCCATTTGTAGCACGTTGACCATAATGGAGCATTACAGAGCTAAAATGTCAACCACCGggcataaaataaacatgaggcgtaaacagtttttttcttttacttgtaCTTGCACTTGCTCTTCCCGAGGCCTGCCTGGGAAGCCAGAGTATGTGGCGAGATGAACACCAGAGCCGGAGCACCCTGGCAGAGATCTGCACTTCGGAGATGCACCTTTTATCATGGTGTCCTTAGGGAACTCATACACTGCACTCGATCCATGAAATATCTTTGGAAGTTACATCACATTAGAAGTAAAAAGATCATGGGAGGGAAAGGGCTAAAATCTGTcgtattttcatttttgctcAAATGTGGATTCCTTCTCCTAATGCTCTGTGCCTGTATGTTGCGAACAATTAAACGTAACTGATTTACACTCAACACACCCATGTGTGGGCCTGGAGGCTGACAGAATCTGTATTACATTTcgttttttggtttggtttctcAAAATAAGAGTACACGTGAAAGAAACCCCGGATCCGACCGACCCCTAGAGCTGTGACCCTGTGCTGACCTGGAGTCGGAGCCCCAGTGCATGGCGTAGATTTTGGCAAGGTGACCTCTAAGCGTGCGTCTCGTCCTCATCTGGATCCGGCCCACAGAGTCCAGGCCGGCCGTGATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71279 lncRNA downstream 618 38125149 ~ 38125363 (-) True G57015
TU71277 lncRNA downstream 7138 38118428 ~ 38118843 (-) True G57013
TU71208 lncRNA downstream 218410 37906405 ~ 37907571 (-) False AMCG00009437
TU71165 lncRNA downstream 391793 37636705 ~ 37734188 (-) True G56927
TU71067 lncRNA downstream 608327 37515969 ~ 37517654 (-) True G56861
TU71281 lncRNA upstream 128 38127468 ~ 38127678 (-) True G57017
TU71282 lncRNA upstream 1644 38128984 ~ 38129202 (-) True G57018
TU71275 lncRNA upstream 1955 38129295 ~ 38133966 (-) True G57011
TU71274 lncRNA upstream 2741 38130081 ~ 38133966 (-) False G57011
TU71435 lncRNA upstream 373778 38501118 ~ 38503129 (-) True G57143
AMCG00009448 mRNA downstream 20188 38094973 ~ 38105793 (-) True AMCG00009448
AMCG00009447 mRNA downstream 33825 38089356 ~ 38092156 (-) True AMCG00009447
AMCG00009441 mRNA downstream 37857 38063826 ~ 38088124 (-) True AMCG00009441
AMCG00009439 mRNA downstream 171926 37942071 ~ 37954055 (-) True AMCG00009439
AMCG00009440 mRNA downstream 192336 37928306 ~ 37933645 (-) True AMCG00009440
AMCG00009446 mRNA upstream 6743 38134083 ~ 38146947 (-) True AMCG00009446
AMCG00009445 mRNA upstream 28385 38155725 ~ 38176524 (-) True AMCG00009445
AMCG00009451 mRNA upstream 115867 38243207 ~ 38259816 (-) True AMCG00009451
AMCG00009452 mRNA upstream 138859 38266199 ~ 38271710 (-) True AMCG00009452
AMCG00009453 mRNA upstream 151911 38279251 ~ 38281530 (-) True AMCG00009453
TU70990 other downstream 905905 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2253384 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2586171 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 452945 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 707976 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 2021385 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4541787 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 5355081 43482421 ~ 43945297 (-) True G58333

Expression Profile