RNA id: TU71304



Basic Information


Item Value
RNA id TU71304
length 542
lncRNA type read_through
GC content 0.44
exon number 2
gene id G57036
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38202794 ~ 38280479 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tttttttaaagAAATGGTTACCCCATGACTTAAAACAGCAGATCGTTTGTTTTATCCCCCATGATATCATTAGAGCACAAAGTAAAGAAGCTGTCatacttttatttaacttttttaaagaataaacatattttttccaatcAAAACGTTTGCGTTAATAAATATATCACCCCTCCAGTAGGTCTGTCTGGTGATGCTTTCTGGCTTCTGTCAAATGAAAGCACAAGTGGCAGGAGGGTGAAGGGCACAGATCACCTGCGTGACATTCGCCCAGGGCAGGCGTTCCTACTGAGGGTAAGTCTTAATTTCAGCACACAGCCGTGCCCTTAAAGGAAGGTACGCCTGAGATCCCTGAACACCATCACTTTCCGATTCTCTGGACCACCCAGTCTTGCTGGCACAGCGGGCAGCGGTTGTTCTGTTTCACCCAGAGAGACATGCAGCAGTTGTGGAACGAGTGGTTGCACTCTCCCCAGACCactaaaaggaaaaagaaaaacaacggTTATCATCCGCGTCAATAATACATTGTAAGATATACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU71255 lncRNA upstream 68828 38130082 ~ 38133966 (+) True G56995
TU71241 lncRNA upstream 134641 38063790 ~ 38068153 (+) True G56982
TU71111 lncRNA upstream 586098 37611255 ~ 37616696 (+) True AMCG00009428
TU71098 lncRNA upstream 649653 37548313 ~ 37553141 (+) False AMCG00009429
TU71031 lncRNA upstream 739289 37460042 ~ 37463505 (+) True AMCG00009415
TU71462 lncRNA downstream 347440 38627919 ~ 38628135 (+) True G57161
TU71465 lncRNA downstream 352618 38633097 ~ 38633351 (+) True G57164
TU71480 lncRNA downstream 476901 38757380 ~ 38834945 (+) True G57175
TU71626 lncRNA downstream 1022858 39303337 ~ 39306230 (+) True G57286
TU71627 lncRNA downstream 1026009 39306488 ~ 39306774 (+) True G57287
AMCG00009442 mRNA upstream 51848 38147975 ~ 38150946 (+) True AMCG00009442
AMCG00009443 mRNA upstream 73390 38125308 ~ 38129404 (+) True AMCG00009443
AMCG00009444 mRNA upstream 108671 38092400 ~ 38094123 (+) True AMCG00009444
AMCG00009438 mRNA upstream 143521 38031385 ~ 38059273 (+) True AMCG00009438
AMCG00009427 mRNA upstream 581404 37619502 ~ 37621390 (+) True AMCG00009427
AMCG00009457 mRNA downstream 53569 38334048 ~ 38354970 (+) True AMCG00009457
AMCG00009456 mRNA downstream 186788 38467267 ~ 38474039 (+) True AMCG00009456
AMCG00009462 mRNA downstream 200634 38481113 ~ 38511022 (+) True AMCG00009462
AMCG00009463 mRNA downstream 261510 38541989 ~ 38583431 (+) True AMCG00009463
AMCG00009464 mRNA downstream 334341 38614820 ~ 38615838 (+) True AMCG00009464
TU71113 other upstream 586511 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 835123 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 2813467 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 4171349 34000796 ~ 34031445 (+) True G56368
TU71381 other downstream 161776 38442255 ~ 38457592 (+) True G57105
TU71670 other downstream 1154421 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1667527 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 1821904 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2710323 40990802 ~ 40994659 (+) True G57604

Expression Profile