RNA id: TU71381


Basic Information

Item Value
RNA id TU71381
length 2204
RNA type TUCP
GC content 0.41
exon number 3
gene id G57105
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38442255 ~ 38457592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGGAATAACATGCATAACGTACCTGGAATAATCAGGGCAAATGATGTCGCAGAAAaaaaacggggaaaaaaaacaagtcatgCAGCAGCAATCAACAATTTCTAAGTTCAAAAATGTTCGGGAACTGAAGGCGATAAcagcatttctttctttttttctttctttctttttctttttttttttttttttttttaaagagactcCATTCCTGGGAATTCAGCTGATCAGTGAGTGTGTTGCGATGCACGCTGAATTTCTCCCTTCCCCAAGCTTGGTAGAAGGTTCCTTCGCGAAgcttttccccctttttcctCTCAGACTTGCAGAACCCAAAGCTGACCACTGCAAAGGGCACTTGTCAtgcttacagaaaacaaaacacacacacacaagaaaatcaACCTATTGATATCGATGCCGAAAATATTAGTCTCAAGTACCAGAGCCCGTTTCACCGCCAGCACCgcattaaagttaaaaatagcCTTATCATGCTTGCAACCTGCATCACGAACTAGAGCAAATTAAAGCCATGGAGGAAACATCAACTTTATTTAGCATTGTGCAGACTGAACAACCTGAAATGCATTTCGCTTCACGTCAGGTTCTCACatattaaatgaatgcaaaaaagCTGGGATTCACGTCATGCCTCACACGAATGGAGTAGAGATAGCAGACTGCAAagcataacaaatacaatatttcagcTCTGTGCAGGCGACCTTAAATATCTTACAGTACGGTGAAGAATACGCCAGGCACAGAAACCCACAGTTCAGCGAAAgatgtcacacacacatgcacacacatgcacacacatgcacacacacagacacacacacacacacacacacacacacacacacagtatttacATACTCACATCCACAACACCAGAGACgatacagtacaatcaatagAGAGCATGCAGAGACAAGAAGCATTGTTAATCCTGTgtgcctgtctgcctgcctgtctgcctgcctgccattTTAAGCAAGCAGGAGTgcactttaagaaaaaaaaaagaagaagaagcagattACGCTGCAGTAGAAGAACTGTGCAAAGGGAGAAGAGTGGACAATGGACAGGTACCTCAAAGGCTGGCAAATGGACAAAGAAGTGTTTATCGCCATCAGGGCTAAAGTCAGAAGGACCCCTCTTCCAAATGTTATCTGGAGATCGAAGAGAATCCAACACACTATTCTGGGAGCACTCACACGAAATGTTCGAAAGCCATGGAAGAGGAAACCCAATCCAAAAAAGGCAGTGATACAGACAAGGACAAAGACAAAGCATGCATTCTCTCTGATTGACGCATCATCAGTGGCATCCTTTATTCATCACACTGGAAGCTCAAAATGTCTGCAGACCATCTAACACAGGGGTGTCCAACCtcggtcctggagagcccctatccagcaggttttagaggtcacccttgtatcaccaatttataaacccctggaagtatttcattctgatcaatgaAGCAGGTGGTGTGGTAAATTCAGAAATTAGAAACTATTGGAGTAATTATCTGAGTACCTGCAGGATCCTGAGGGAAGGATCCCCTCGTgttgacttgcttaattgattaataactcacatgttcctagtatttagaaattggtgatttaggctGACCTATAAGATTAAGTGGATTGGCTCAAGACCGGGGTTGTACACCCCTGATCTAACACATCAGTAATGGAGATGGAACAGCTGATACCCTGAACTCACCAGTGTTGTGTGTGACAAAACgcattgtaattgtaatgaaTTCATGGATTGTCAATGTTGTGGTTTACATTTGTGGGTTAATTGACTGGTTGCAATTAAATGTGACTGTTTGTGAGTGTCTTTATAACAAAGATTGTAGATAGTAGATCTGattttgaatgaaataaaacttGTGGGGAGtgtatttttaagtgtgtaCTATTCTCTTTTTACATTCAGTTTTTGTTCTGGCTGTTTGCTGCACATATCTGCTCTATTGTTAGCAATAGCCATTGGTTAGTTTTGCTGTCGTGAACCCACAGGCTTGCAGACTTCAAAAATTAAACGCATGAAAACCGCAGAACCCTCCCATTTACTGCAAAAGCAAGATTATAAGATACCTACATATGCAATTCCTATAATGTCTGACAGTTTGTTCTAAACTCCTTTTACACTTCTAGTTTTATGTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71304 lncRNA upstream 161776 38202794 ~ 38280479 (+) True G57036
TU71255 lncRNA upstream 308289 38130082 ~ 38133966 (+) True G56995
TU71241 lncRNA upstream 374102 38063790 ~ 38068153 (+) True G56982
TU71111 lncRNA upstream 825559 37611255 ~ 37616696 (+) True AMCG00009428
TU71098 lncRNA upstream 889114 37548313 ~ 37553141 (+) False AMCG00009429
TU71462 lncRNA downstream 170327 38627919 ~ 38628135 (+) True G57161
TU71465 lncRNA downstream 175505 38633097 ~ 38633351 (+) True G57164
TU71480 lncRNA downstream 299788 38757380 ~ 38834945 (+) True G57175
TU71626 lncRNA downstream 845745 39303337 ~ 39306230 (+) True G57286
TU71627 lncRNA downstream 848896 39306488 ~ 39306774 (+) True G57287
AMCG00009457 mRNA upstream 87285 38334048 ~ 38354970 (+) True AMCG00009457
AMCG00009450 mRNA upstream 200871 38206984 ~ 38241384 (+) True AMCG00009450
AMCG00009449 mRNA upstream 236171 38194847 ~ 38206084 (+) True AMCG00009449
AMCG00009442 mRNA upstream 291309 38147975 ~ 38150946 (+) True AMCG00009442
AMCG00009443 mRNA upstream 312851 38125308 ~ 38129404 (+) True AMCG00009443
AMCG00009456 mRNA downstream 9675 38467267 ~ 38474039 (+) True AMCG00009456
AMCG00009462 mRNA downstream 23521 38481113 ~ 38511022 (+) True AMCG00009462
AMCG00009463 mRNA downstream 84397 38541989 ~ 38583431 (+) True AMCG00009463
AMCG00009464 mRNA downstream 157228 38614820 ~ 38615838 (+) True AMCG00009464
AMCG00009468 mRNA downstream 198193 38655785 ~ 38729386 (+) True AMCG00009468
TU71113 other upstream 825972 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 1074584 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 3052928 35388914 ~ 35389327 (+) True G56536
TU70453 other upstream 4410810 34000796 ~ 34031445 (+) True G56368
TU70456 other upstream 4423440 34015670 ~ 34018815 (+) True G56369
TU71670 other downstream 977308 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 1490414 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 1644791 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 2533210 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 3578426 42036018 ~ 42078241 (+) True G57830

Expression Profile