RNA id: TU71435


Basic Information

Item Value
RNA id TU71435
length 1833
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G57143
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38501118 ~ 38503129 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTTGAATGGAATCCATACACACCATATTGTATGGGTTTTTGTCCAAATCCCTGCCCTGCCCAAGGGGTTGCTCTCATCGTCCGTGGACTCGCGCTCCTCCTCAGCCTGTATACTGAACTGTCTGACAGCCTGGTACACCGTCATGTTGTAGGGCAGTAAGTGGTCTCCGATGTAGAACTGTAGTCTGTGCCTCACATTTCCAGAGTTCAAAAACTGTGCAGCCAGTGATTCATCGATTTCATCATCGGATCCATCATCATCACTGTCCTCATCTTCCTCTCTGATTCTTCCATAgcCTCTGACAACCAGGTATCTTTCAATAGCTTGTACCAAAGCCAAAGGATCGATCTTCACTGGACCCCCCTTCCATTGCTTCACGTTGGTGCAGTCTGGATGTCTTTGGAGCTGGCATTTTAACTGATGAGTGTTGAAGAATTTCAGGGCCTGAGAGCCTCTGTTaagaaaaaagcaacagaaaaaaacattatcctGAACTGAAAATGCTGCAACATACTACATGCAGTCGAATAAAGCTTGAGGGAAAACAATACTCCAATTCCAATTTGCATTACATTCAAAACATTCTTGTGTTATCAACTGCGAATGCCTACCTGCTGCCAGTTCCATTCCCACTAGGAAAGTCATGGACTTTCACTGGAAACTGTTCCATCTGGCTGAGACAATTGTTCATTTTGTGCACAAGAGCCATAAGGGGTCCATTCTCTAATGGATCAACTCTCCCAGGGGGCTCTGTTCCAGGAACCTGAAATCATTCAGTGAAATCCAAAGTGAAAACAATACTGCTTTGAATTATAATGCCTGTGTAACTGCAGTTATACTGTACaacacatatataacatatttaagacaactttttttttttgtgttacatTAACATTGTCTGGACTCGGCTGTTGTCGGAAGTAGCTTCGTCCTCAATGGGTTTCACTGATACTTTGATTTCCACTGATAAACCATAAGGTTGGCTTAGATCaaaaggagagaggaaaaagtaTGAGTGGAAAAAGatgtatacaattaatatagAGCTGCTCGCACAGTGTGCCTGTGTGTAAACATGCTCATACTAAACCAAACGATGGGGGTAGGCTGACCAATTGTACAAGCCCTCTTTACAGGGTAAGAGGAACTAAGAAAAATCCTGAAACCAAGAACACATAGCATGAATCAAATTATCCATTGTAGAATTAACAGAAATCCTCAGTATCTATACACACTCACAGTCTGCTCAAAACATGCACTGGCCACCTTGCACTGCAAAAGCCTAATGCTGAATGTAAGTTTGAAAACCTTGAagaaatgtgcatgtgtttacaTGTTTGGATATTAACCATCAATATCATATCATCAGAAATACTTTGCGCTAACTTACCGGACAtccaaaaaaaacatgcaggaaCCTCTTTAACCGAACATCCCGACTGACAGCATCCTTGTCACTGTTGGAGGTCAGGTACAGCAGCAACTGTTTCACAAACCCACTGTGCTGGATTTCAAAGGAGGACACGTCCGACTCTGAGACTATACTGCGGATTTCTACAAGGCACTCGATCCCGCCATCCACCTggatacacaacacacaagcgCTCGTTCAATTCACAGTTCACAAGTTCAGctcaacagaaaaacacagattgaAGGTGCATTCAGTTAGGTGGTAAAGGTACCTGTAGGTTGAGTTGTTCAGTAGCAGTGCAAAGTCTCTGTAGTACATTCAGTGCAGGGTTACTTGCATCCACATTCTCAGAGTTAAAATAGCGTTCCACAAACTTGCTGGCCTGTTCCTTTATCCAAATCTTGATCTTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71275 lncRNA downstream 367152 38129295 ~ 38133966 (-) True G57011
TU71274 lncRNA downstream 367152 38130081 ~ 38133966 (-) False G57011
TU71282 lncRNA downstream 371916 38128984 ~ 38129202 (-) True G57018
TU71281 lncRNA downstream 373440 38127468 ~ 38127678 (-) True G57017
TU71280 lncRNA downstream 373778 38125981 ~ 38127340 (-) True G57016
TU71466 lncRNA upstream 129983 38633112 ~ 38633397 (-) True G57165
TU71506 lncRNA upstream 269297 38772426 ~ 38773951 (-) True G57194
TU71580 lncRNA upstream 578292 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 1077482 39580611 ~ 39588074 (-) True G57351
TU71703 lncRNA upstream 1085557 39588686 ~ 39588911 (-) True G57354
AMCG00009459 mRNA downstream 20083 38474184 ~ 38481035 (-) True AMCG00009459
AMCG00009461 mRNA downstream 64509 38432575 ~ 38436609 (-) True AMCG00009461
AMCG00009460 mRNA downstream 86797 38378812 ~ 38414321 (-) True AMCG00009460
AMCG00009458 mRNA downstream 133585 38357920 ~ 38367533 (-) True AMCG00009458
AMCG00009455 mRNA downstream 181685 38317970 ~ 38319433 (-) True AMCG00009455
AMCG00009467 mRNA upstream 251721 38754850 ~ 38762930 (-) True AMCG00009467
AMCG00009471 mRNA upstream 272429 38775558 ~ 38810559 (-) True AMCG00009471
AMCG00009470 mRNA upstream 314066 38817195 ~ 38820080 (-) True AMCG00009470
AMCG00009472 mRNA upstream 324836 38827965 ~ 38837594 (-) True AMCG00009472
AMCG00009475 mRNA upstream 405893 38909022 ~ 38935195 (-) True AMCG00009475
TU70990 other downstream 1281042 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2628521 35872123 ~ 35872597 (-) True G56568
TU70685 other downstream 2961308 35538887 ~ 35539810 (-) False G56546
TU71449 other upstream 77156 38580285 ~ 38582820 (-) True G57155
TU71520 other upstream 332187 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 1645596 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 4165998 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 4979292 43482421 ~ 43945297 (-) True G58333

Expression Profile