RNA id: TU71506


Basic Information

Item Value
RNA id TU71506
length 1096
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G57194
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 38772426 ~ 38773951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGAGGTGTGCAGCTGCCTCGACACCTCCGTTGTATAGAGTGAAGTTTTGAGAAGGTTTCTTGTCTTCCCACAGCACTTGGATGTAATTGCCAACTTGGTAGTATCCGCAGGTAGACAGGATCCACCACAGGGACCAGTAAATCAGCTGTTTTGCTGTGTAACATTTCAAGAAGTCGAACCATAACTGCTTGAGTATGCTGACAAAGCCGGTGTTCTCATGCACGACCGAGGCAGATGTGCTTCCACCCAAGTCGTTGCCACCAGTTTTCTGGGCAGTGGTTTTGTCCGTGTCTTCAGGTAATTGGATCTGCCCGTTGCCCTCTGGTGTTATACAGTTTTTCCGGTggaaaaacatgcttttttccGGCATAGGGAGGAAAAAGGAGGCTATCAACGCGATGCACGATAAGACTAATGTCATGATGAGGATGTTGTAAAACGACATGGCCTCAAAAGTTACCAGGAATTGGCCCAGCACAGACCCCACGGTGTAGCCAGCAAGCTGAATACTCCGGCAGTAACTGGTCACTTTCTGGTAGCGCTCCAGGTCTACCACACTGTAGATATATGAGAAGTATGCGATTTCGGTGGCAGTGACTACGCCGTAGAAGAACTCCATAAACTGCATGGCCAGCACTCCGTCGGCCCAGAGGAGCATTGTTGTTGTCGTAATTAAACTAAGGACTTGTAAAATGATGACTGGTTTATATCTTAAGTAGTCTGTGGCCAAGAACACTGGCAACAGGATGATGAGATAAGAGTATGTCCACACTGGAAGAATTTCATTTCCACCTGCTGTGTTGTGAGGTTTTTGTCGGGTCCTGTCAGGTATGGTATGAGAAAGGGCTCTAAAGGCTTGACCATGGAGAAGaacccatacacacacatcagagCAGTGGGGAACTGCCAGCTGGACCGGAATCTCCTGAAAGCCTCCATTTTTTGAAGATGTCTACTCCGCTGTTCTGTAGCAAAGTTATAACTGAGCAAAGGTATTGTAAGGTACTCTGCTTTTCTCCCcacacatttccttttctattgTGTGAAAGCAAATGCGCAGCTGCTTCCTGTCTTACTAATACAACTGCGAAGT

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71466 lncRNA downstream 139029 38633112 ~ 38633397 (-) True G57165
TU71435 lncRNA downstream 269297 38501118 ~ 38503129 (-) True G57143
TU71275 lncRNA downstream 638460 38129295 ~ 38133966 (-) True G57011
TU71274 lncRNA downstream 638460 38130081 ~ 38133966 (-) False G57011
TU71282 lncRNA downstream 643224 38128984 ~ 38129202 (-) True G57018
TU71580 lncRNA upstream 307470 39081421 ~ 39083424 (-) True G57244
TU71700 lncRNA upstream 806660 39580611 ~ 39588074 (-) True G57351
TU71703 lncRNA upstream 814735 39588686 ~ 39588911 (-) True G57354
TU71735 lncRNA upstream 1032684 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 1100020 39873971 ~ 39874229 (-) True G57400
AMCG00009467 mRNA downstream 9496 38754850 ~ 38762930 (-) True AMCG00009467
AMCG00009459 mRNA downstream 291391 38474184 ~ 38481035 (-) True AMCG00009459
AMCG00009461 mRNA downstream 335817 38432575 ~ 38436609 (-) True AMCG00009461
AMCG00009460 mRNA downstream 358105 38378812 ~ 38414321 (-) True AMCG00009460
AMCG00009458 mRNA downstream 404893 38357920 ~ 38367533 (-) True AMCG00009458
AMCG00009471 mRNA upstream 1607 38775558 ~ 38810559 (-) True AMCG00009471
AMCG00009470 mRNA upstream 43244 38817195 ~ 38820080 (-) True AMCG00009470
AMCG00009472 mRNA upstream 54014 38827965 ~ 38837594 (-) True AMCG00009472
AMCG00009475 mRNA upstream 135071 38909022 ~ 38935195 (-) True AMCG00009475
AMCG00009476 mRNA upstream 238891 39012842 ~ 39013371 (-) True AMCG00009476
TU71449 other downstream 189606 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 1552350 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 2899829 35872123 ~ 35872597 (-) True G56568
TU70686 other downstream 3232616 35538887 ~ 35539810 (-) True G56546
TU71520 other upstream 61365 38835316 ~ 38837564 (-) False AMCG00009472
TU71924 other upstream 1374774 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3895176 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 4708470 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 5215560 43989511 ~ 43995654 (-) True AMCG00009672

Expression Profile