RNA id: TU71627


Basic Information

Item Value
RNA id TU71627
length 287
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G57287
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39306488 ~ 39306774 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTAAGAAGGAGTAGCCCATCCATAGGCTGCGCCACCCTCTGGGGCACATGGGGATGATCGAGTCCTGGCTGTGGAATGCCACTGCGACAGCGGACGCGTCGCACACCACGCATCTGCTGATGTAGCGCTGAATCTCCTCGCCCGACACCGGCATCATGGGAATGGGAGCCGTGGTGGACAGCCAGTAGGATTTATCATTTCGACTGGCGTAGTTACACACTCCGTTCATGTTGCAGAACGTGAAGGGCATCGTGCTGAACATTGGCAAACAAGACCCTGCGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71626 lncRNA upstream 258 39303337 ~ 39306230 (+) True G57286
TU71480 lncRNA upstream 471543 38757380 ~ 38834945 (+) True G57175
TU71465 lncRNA upstream 673137 38633097 ~ 38633351 (+) True G57164
TU71462 lncRNA upstream 678353 38627919 ~ 38628135 (+) True G57161
TU71304 lncRNA upstream 1026009 38202794 ~ 38280479 (+) True G57036
TU71673 lncRNA downstream 152624 39459398 ~ 39459676 (+) True G57329
TU71734 lncRNA downstream 499809 39806583 ~ 39806928 (+) True G57378
TU71769 lncRNA downstream 568107 39874881 ~ 39875170 (+) True G57401
TU71800 lncRNA downstream 634448 39941222 ~ 39943036 (+) True G57428
TU71839 lncRNA downstream 723772 40030546 ~ 40033333 (+) True G57457
AMCG00009479 mRNA upstream 3703 39277091 ~ 39302785 (+) True AMCG00009479
AMCG00009477 mRNA upstream 151394 39133854 ~ 39155094 (+) True AMCG00009477
AMCG00009474 mRNA upstream 405951 38869487 ~ 38900537 (+) True AMCG00009474
AMCG00009473 mRNA upstream 463177 38841956 ~ 38843311 (+) True AMCG00009473
AMCG00009469 mRNA upstream 488822 38814035 ~ 38817666 (+) True AMCG00009469
AMCG00009484 mRNA downstream 71475 39378249 ~ 39393565 (+) True AMCG00009484
AMCG00009483 mRNA downstream 86795 39393569 ~ 39401188 (+) True AMCG00009483
AMCG00009482 mRNA downstream 97555 39404329 ~ 39405173 (+) True AMCG00009482
AMCG00009481 mRNA downstream 102718 39409492 ~ 39415596 (+) True AMCG00009481
AMCG00009480 mRNA downstream 128182 39434956 ~ 39437017 (+) False AMCG00009480
TU71381 other upstream 848896 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 1690205 37610343 ~ 37616283 (+) False AMCG00009428
TU70945 other upstream 1938817 37360101 ~ 37367671 (+) True AMCG00009405
TU70668 other upstream 3917161 35388914 ~ 35389327 (+) True G56536
TU70456 other upstream 5287673 34015670 ~ 34018815 (+) True G56369
TU71670 other downstream 128126 39434900 ~ 39436995 (+) True AMCG00009480
TU71802 other downstream 641232 39948006 ~ 39949200 (+) True G57430
TU71881 other downstream 795609 40102383 ~ 40104948 (+) False AMCG00009516
TU72035 other downstream 1684028 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 2729244 42036018 ~ 42078241 (+) True G57830

Expression Profile