RNA id: TU71700


Basic Information

Item Value
RNA id TU71700
length 3532
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G57351
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39580611 ~ 39588074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGAAAGGGTTTCATGGCTCTTACGGGCACAGACGTTGAATAACTCGAAAACCCTGAAAGTCTGCCTTGTCCCTGAGGCTATCGGAAGGGTAGtttccaaccctggtcctggagggtgCCAAAGCCTTTAGGTTTTTATATCCACTGTACAAATCCCATGAATCATGAATGAACAGTCCCACAATTGATGGAAAACTGTCAGCACGTTTGAAAGCAAAAGGTGTTAGTGATCAGATCTTCCAAAGATGTGCCATGTTGGTGAGAGTGGAATAACTGGGGCAAATGGGCAAGAGAGATGAATACAGGGTAgtcacattaaaaatgaaatatcaacCTTTGTACACTATTTCCACATGCTCTTATTTCTCAGGTGTTGCACCATGCTGTggtatttttgtctttgtaaaAGACGCTTAAATGCTTCTTGCATTCAACGCATTGTGTTCAGTTAATTATACGATACAAATGAAAGCCATTAATGTGTTGCTTTTCATTGCTGTCAGCGCTTTACAGGGGGTCACCAGGACATGTTCAGTTCCTTTTGGAATGCAATACAAAGCCATAGGCAAAGTTATCACAtagtttgcttgtttgctgtTAATAATGCATCATTCCAAGCTACCGTTGACCTCTTCCTCTAGTGTTTACATAAAACAGGGTTTATAAATGGCATACCAAACCTCAAAATAGCCAGCATTGAAAAGGGACCTTTTGAACTGTCGTGGAATGTGAAACGGGCAGAGGCTGTTGTTTGCTTGGACAGGAGGCCTGGTTAGTGtcagagagaaggaaagacaCTGGTGCTGTTAAGAGACCTAAAGACATTCAAAAGCAGAAgGCTTCCCAtttcaaaaaggaaattatCTGCTTAACATGCTTCTGGATCAggataatgataatacaaagGTACAAAGGCACGTCAAAATGCTCAAGGGAGTGAAAATAGCTGTTAAGCCTCAAGAATCCTTCTGATAGATGTGTGGGACTCCACAGACAGTTGCATGATGGCTACATCAGTGGAGCGGTGTTGCATCTTGATCAAGAAAGTGCATTGTGCTGGCTGTGTTCCAGTTCTGATGAGCACCGAAGTGGCACCAAGATTCTCCTGCCAGATTCCCCTTTGACAGAGCGTCCTCGGTGGGAGACCAAGCACACCATCCCCGAATGAATGGAAAGAAATGTTGAAGAACTGCCCCTTTAACTTTTCCTCTTTCCTGCTCAGCAGACACAAGAAACCCAACACTTCAACCAAATAAAGGAGGGCGCAATTGACAAGGGACCAAATATCCTCTTGCatagtcattttttaaaaggatttaatATCCTTTTACATGCTCTTCATAACATTTTGACAGTTATTgagctgcagttttttttttaatatgtatgtgtgtatgtattgctTGAAACTGAAAAGGCTAGTCAGGTAATCTTGttgtttgttgtcattgtgGAATGGTGTTTTCCTAAGAAGCCAGGGCGAAATGGTAGTTACAGGTAACTTTTCATCGCAGTATGAActttggtcctcagtttgctccattttttattaattgcacCATCTGATTAAGGTATGAAACgaattgtgcttttatttcgTGGGAAGAGGTGTGCATATAGACAGGTTCAATTGACCAATTCAAGCTTTTATTGCTGCGCAATATGCTACACTTACAGTAcatgttgtatatatattgtgaaagttattttcaaaaaggtcaatgtcctggactggcccagtcaaagcccagacctcaatccaattgagaatgtgtggaaaattctcaaagaaaaaaatgctgtgtccagatgtgcacagctggtagagactgatccacatagactcatggctgtaattgctgccaaaggtgccaaatattgactgaaggggtgattacttatgcattcaattattttctgttgtgtatttgtaattatattatagttttcactttgacattatggacattttctgtgttgatcagtgtcAAAAACTCCTGATGAAATCCATTCTGAgttcatattgtaacacaatgaaatgtggaaaagtccaagggggtgaatacttttgagagccactgtacataGCCTCCAGTTCTGTCCACcttttcctgcattttaaatattattgtgtAACTGTAGCCTATACTGAGGGCTTCCTATTTGCAAATGAAATATAGAggtgtttatataaaaatatccatatacattatatatatttaaatatatatccatcATACATTCcatatacatgtaaatgtatgtagttTAGTTCATAGttctctgtttcttttctgtaaGGGAATCTCAGACATTTGCAAAGCATGCATTCCCCTCCCAACACCAAACCTACATTAAAAACCCTTTTGATTTCCCAGGAACCCTCACAGGTCCCCCCCACAGTACTTATTGTTGTTTCTCATGCATTTGATCACTGACCTGCACTGATTGTACAGTTTATAAACTCTTTGCGTTCCAGCAGTGGAAAATTACTGCAGTGAATGAAAGGAATCTGCCTCTTTGTGGGAAGGGTATTGTGCTGCAGCACTAGGGTGCCAATGTCCCTTTTTTGTGAGCAATTTGTGCTGAAGGTAATAATTTTCTCAAAACAGAGGAAGGTCTTCGTTTCGATTAGCGAAACAATGGGAGTAATTGTTCGACCAAATACCTGAAAACAGTGGAGTAACACGCGCCCAGCGCCTTCCTTCGAGAAAGACGGCTTTTCCTATTGTCACTCCTGCGTCTCAGGTGGTGAGATATGATCTTTACAAATGGCAGGCTGCATAGCTGACGAAGGGGCAGATTTCAAACAGAGCAATTTTACAGGACAGGAAATAAACCAGGGATTATAAAGGTGGTTAGTAAACCTCTGTGTATCACCTGCACCTTACAGATTACTTGACCAGCTTTCCAGAAACCCAGGAGCATTTACAGTAACTGTAGGTAGTTGTacttgaaagtattcacacccttaatTTTGAAACAATATGACTCAGtgctttgtatgttttatattatacagtTTACTGAATAAGTATATATGCTTCTAAAGTTTGCCTGAGTGGCTTCTTCTTAAATGTATACTAACAGCTGATTGGGATTGTGCAAGTGTGGTTTGAGCATCAATCACGTTAGTACAGCTTCACTCTTTGCATGAATCAGATGTGAAATGTGTACCTTTCTTAGAGATTGATGAGTTAATGCAGGAGACCTCTATTCCGCAGGGGCCACAGAGTTCACAATGATCTAAATCAACTATCCTTTTGCTAGATTACACTAGCGCAACACATTTGCCTGCTGTTGATTTAAAGAGATACTATAAAACCTGCGCACTGCATCCCTGAAGCTCTGGAGCCGTGTACCACTGACTGGAGTTATTAATCAACGTTGCCGTTTACTTTAATCAACCACAAGAGGGAGTGTATTACACATTTGACAACAGCAAAATAGAAGAAGAAAGACACCCTCTGTTCATCTCAACATTAAAAACGTTTACTGAGAGCATGCatcatttcttttaaatgtatttt

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71580 lncRNA downstream 497187 39081421 ~ 39083424 (-) True G57244
TU71506 lncRNA downstream 806660 38772426 ~ 38773951 (-) True G57194
TU71466 lncRNA downstream 947214 38633112 ~ 38633397 (-) True G57165
TU71435 lncRNA downstream 1077482 38501118 ~ 38503129 (-) True G57143
TU71275 lncRNA downstream 1446645 38129295 ~ 38133966 (-) True G57011
TU71703 lncRNA upstream 612 39588686 ~ 39588911 (-) True G57354
TU71735 lncRNA upstream 218561 39806635 ~ 39806927 (-) True G57379
TU71768 lncRNA upstream 285897 39873971 ~ 39874229 (-) True G57400
TU71933 lncRNA upstream 571323 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 751273 40339347 ~ 40343479 (-) True G57545
AMCG00009491 mRNA downstream 60531 39516447 ~ 39520080 (-) True AMCG00009491
AMCG00009486 mRNA downstream 111318 39449717 ~ 39469293 (-) True AMCG00009486
AMCG00009487 mRNA downstream 182446 39313287 ~ 39398165 (-) True AMCG00009487
AMCG00009485 mRNA downstream 272428 39305973 ~ 39308183 (-) True AMCG00009485
AMCG00009478 mRNA downstream 309128 39266196 ~ 39271483 (-) True AMCG00009478
AMCG00009494 mRNA upstream 1794 39589868 ~ 39614413 (-) True AMCG00009494
AMCG00009492 mRNA upstream 58752 39646826 ~ 39654320 (-) True AMCG00009492
AMCG00009493 mRNA upstream 91844 39679918 ~ 39692549 (-) True AMCG00009493
AMCG00009502 mRNA upstream 179586 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009501 mRNA upstream 231659 39819733 ~ 39827370 (-) True AMCG00009501
TU71520 other downstream 743047 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 997791 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2360535 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 3708014 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4040801 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 560651 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 3081053 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3894347 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4401437 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4920179 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU146656 True 1311 lncRNA 0.42 2 NC_047601.1 30087728 ~ 30089080 (-)