RNA id: TU71768


Basic Information

Item Value
RNA id TU71768
length 259
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G57400
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39873971 ~ 39874229 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccggtgcagtgccatgactagttaaaaataaactgaaggataataatcggatcgtagcagatattattaatattttatgaacaactggacggtgattcaggctgtcgttttgtgaatggtgtgtaGTCTGTTGGATTACAGCcctgcagagacaatcagtgtgaaggcaaacacgattcagttaacgtgtgcccatttacaagttaaattaacaaataaataaatacagcagatctgggtttccctcttaaacattaag

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko05032 Morphine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71735 lncRNA downstream 67044 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 285060 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 285897 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 790547 39081421 ~ 39083424 (-) True G57244
TU71506 lncRNA downstream 1100020 38772426 ~ 38773951 (-) True G57194
TU71933 lncRNA upstream 285168 40159397 ~ 40159608 (-) True G57524
TU71955 lncRNA upstream 465118 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 847202 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 1058736 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1940372 41814601 ~ 41815807 (-) False AMCG00009571
AMCG00009501 mRNA downstream 46601 39819733 ~ 39827370 (-) True AMCG00009501
AMCG00009502 mRNA downstream 105052 39767660 ~ 39768919 (-) True AMCG00009502
AMCG00009493 mRNA downstream 181422 39679918 ~ 39692549 (-) True AMCG00009493
AMCG00009492 mRNA downstream 219651 39646826 ~ 39654320 (-) True AMCG00009492
AMCG00009494 mRNA downstream 259558 39589868 ~ 39614413 (-) True AMCG00009494
AMCG00009500 mRNA upstream 1830 39876059 ~ 39882235 (-) True AMCG00009500
AMCG00009507 mRNA upstream 66983 39941212 ~ 39951534 (-) True AMCG00009507
AMCG00009508 mRNA upstream 79188 39953417 ~ 39965123 (-) True AMCG00009508
AMCG00009513 mRNA upstream 112511 39986740 ~ 39996178 (-) True AMCG00009513
AMCG00009511 mRNA upstream 126834 40001063 ~ 40004644 (-) True AMCG00009511
TU71520 other downstream 1036407 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1291151 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2653895 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4001374 35872123 ~ 35872597 (-) True G56568
TU70688 other downstream 4334161 35538887 ~ 35539810 (-) False G56546
TU71924 other upstream 274496 40148725 ~ 40157471 (-) False AMCG00009521
TU72548 other upstream 2794898 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3608192 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 4115282 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4634024 44508253 ~ 44512249 (-) False AMCG00009697

Expression Profile