RNA id: TU71933


Basic Information

Item Value
RNA id TU71933
length 212
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G57524
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40159397 ~ 40159608 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaccttttcaccctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcaaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaaaacggaaaacgggagacacttcttcacacagagagtcgtcacaatctgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71768 lncRNA downstream 285168 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 352470 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 570486 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 571323 39580611 ~ 39588074 (-) True G57351
TU71580 lncRNA downstream 1075973 39081421 ~ 39083424 (-) True G57244
TU71955 lncRNA upstream 179739 40339347 ~ 40343479 (-) True G57545
TU72026 lncRNA upstream 561823 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 773357 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1654993 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 1881591 42041199 ~ 42056128 (-) False AMCG00009582
AMCG00009521 mRNA downstream 1949 40121463 ~ 40157448 (-) True AMCG00009521
AMCG00009517 mRNA downstream 40669 40106123 ~ 40118728 (-) True AMCG00009517
AMCG00009522 mRNA downstream 91148 40052151 ~ 40068249 (-) True AMCG00009522
AMCG00009519 mRNA downstream 117181 40030523 ~ 40042216 (-) True AMCG00009519
AMCG00009523 mRNA downstream 132214 40026668 ~ 40027183 (-) True AMCG00009523
AMCG00009518 mRNA upstream 614 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009520 mRNA upstream 18878 40178486 ~ 40180235 (-) True AMCG00009520
AMCG00009528 mRNA upstream 298199 40457807 ~ 40472602 (-) True AMCG00009528
AMCG00009527 mRNA upstream 313028 40472636 ~ 40480067 (-) True AMCG00009527
AMCG00009531 mRNA upstream 322068 40481676 ~ 40493252 (-) True AMCG00009531
TU71924 other downstream 1926 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 1321833 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1576577 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 2939321 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4286800 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 2509519 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3322813 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3829903 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4348645 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 4382286 44541894 ~ 44542809 (-) True G58584

Expression Profile