RNA id: TU71954


Basic Information

Item Value
RNA id TU71954
length 4000
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G57544
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40339382 ~ 40343381 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGACTCTGATCATATGGAGGTGTGCCAGCTCAACAAggctgtctttttttctttcatttaaccTGCTGCTTCTCAGGCTGCTCTGCATTCGCTTGGAAACAGGGGCCTTctaggagaaaaaataaaaaccacagagAAAGGCATCTTCTCTTCATGTACGCTCGAGCTGCTGTAATCCCTTATTCCAAATCCAAAGTGCTTCCTGGTCGGACCGCCCTGTTGCTCCGTCGCTCCGTCACCACAGCCTCTCAACAACACCCGAGGCCCGGCCCTTGGCACTGGCTGCTTGTATGGGAAGAGAACTGGTTGATTCGATTATAGgttgttctgtattttgtattgttctgtttCAGGCTAATGAGATCCCTCATATATCTATAAAAGATAAGCCTTCCACAATACAAGCTTTGGATACTCCCGCCATATGCTTAAACCTTAAAGTCTCCTTCACTGCTGCTACTAGATGGAAACAGTTTTCCACTTCAGCAAGGCTTGgtacagcattttaattttagttttgagCTGTTTCCGAGATGGTGAGATACAGAGACCACTGACAGGAGGGTGAACAGAAATCTGTTGATAGAGGCCTCCAGTttgagtttctttttaaatatgctcTTTTACTTCTAGggtttgaatgcatttttgcactttagATTCCCCTTTAAGTGATGACTTGCATACATTTAAGATTAAGGGCAACCAGGTGGCAGCCAAATCACCCCCGTGCACATCTACACCCCTCTCTATCCCCTTCAGCGCGCACTTCAATATGACCAGGCAGAGTAACTCTCCTGTCGTAATGGTATCTCCCTTGCTTTACTGTCAACCCCCTTTTTTAACAGTGGAGGATTAACCCACAAAGACAGTGTCCCTCTCCGGTGCTGCCCCATTTTCCATCTGATTTTTTCTAGTTTGCATCCAGTCACAGCATGGCACTGTTTTGCTTCACCGGGCAATGCCACGGCAAAGCTGTTGCCCTATACCAAACACCCCTCTTGTTGTAATCTCTCAGCATCCATCGAGGGGTGTGTCACTAGCGCACCGATAGAAAAATAGATGCATCATCATTTGTATACTTTGAGAGCCTACAGCTTAGGAATCTGCTCTCAAATCTCCTCCAACAATCTCACAAACGATCTCCATTTAGAGATAGAGTTGCAGTTGTGTTAATGCTTTGCCTTTTCGTCTGTACAACATATTAACAAAACGTGAACAGGATTACACAACAGTATTACTTGTGGTGCTCCTAGGCCCCCTTTAACTTACAATGTGGTGGCACAGGGTGGCCTATCAAAGCACAGAGATCTGTGGCAAAATCAGTGAACGTGGCTGGAAATGCTTTTCTTAGTCGGGTTCCATAGATCGCTATGAAACTAATGGCAACCATCTTATATCGTAGTATATTCACAATTCAGAAGTAGTGTCACTGTTTCCAACTACCTAATAAACTtaggtaaaataaatgaaatgggaATGATTGTCCTGCTGACAAAACCCACAAACACCATTTCACTTCAACTAAGCATCAGAATTTATTCAAACTATTGCTTAATCAGTGCCAAGTGTACTGTGATTATAAGGACACTGGGCTCTGGTACAATCTCTCCTAAACAGCTTTTGAGAGACATTTTCCACCTAAGGTCAAACCCTTTCTATACACTTGATGTCTTTTTATCATGCAAATGTGTCTTCTTTGTGGTCTGACTTTCTTTCTTGTTATCGTCGCTGAATGCACACTGACGCATCGGCACAATGGCACTTTGTGGGTAGAGAGAGCCTACGGGGAGTGAACAGTCAGGTGCAGATACGCCAAAATGCCAAGCAAGTCACCAGGCTCAGAACAAACAGGAAGCCGTGACTGACAGCTCGCAGGGCACAAAGGCGACAGAAATGCACCTTTCCCAAACCGCGATCTGCGGAACGGTCACTGTAAGATTCCCACTTTGCTTGGCAAAAAAAGTAGTTTAAATAGGCTGGAGCTCCGGTACATCCCTATATACCAGATATACAAATAATAGAGTGTGTAGCTTGGCACTGGGGTGGCTGGCCGATGTTTATGCCAGCGTTTTTCTTGAAATGCCCATTGCTTGAAAtccgtgtgtgtgtctttcccGTCGTTTTGAATTCCCCTAGTTTTCCCTATattttgctgtgctttttctatttctttacaCATTTTGCCTTTGCTATACTCACACGGTCTTCACTTTACTGCTGCTATGATTAATTACTCACTTGGTTGTACGGGGCTGGTttatgtttccctttttttcccatttcttaatttttcatACTTAATTCAGTCTAGTTACTTTCTTCTTTCTGTAATCTGAGTCAGCATCTCGCAGTATAGAAATTCGGTTGTTTTTCCCCACAAATGAAAAGTGTAAAGTCTTTTCATTAAATTTCATCATCCTGATAGCTGTGGGGGAATAATATGTCGGGGACGTATTTCAGGAGCACATCAGGGACTTCCAGAGTATTCTGCAATGACCATGTCTTGCTTGCCAGTGACTGGTTTTGAGGCAGTGCATTGGGCATGGCGCTGGCCAGTGTAGGACAGAAGTGAAgtgcaacacaaatacataaggACTCAGTGGGTGTTTTTCTCTGAGCCACACGTGGCAGCGTCCGCACCTCCCCTGCAGATCAAACCACACATTAACAGGCATGAAACCCAAGATCAATATCAGACCAGTCTCATGCCTTCTCTACAGAAATAAACTATGATCACGCAGGAGTCACAATGCAAACTCTCTCCAGTgctttctcctgttttccaaGAGCAATATATTGAAAGAATGCAAGTCTGAACGGTGGCCTGAATCTACAGTCATAAACACTTGCAGCAGAATTCTACGCCCTTCGAAACACAATAAGCAcgtatttttgcttttttctccacacaaacaacaatatttaaaaatcaaagcaTCACGTATCCTTAAACGTTGTTTTTTTATCACTATAGCCTTTcagattatatgtattttatatgaactggtgttttccatgttttttttgtttgtttgtgttttacagtatttcattatatttcctAACTTGTTCTCTTAATCTGTGTaaacagtttggagtttgtaATCCTATGTTCATGCGTGTAACATGCctcctgctttttttttaaactgtgccATGTAATGCTGCCAGGCTTTGCGGCGAGCTTTGTGGGGTTTACACCCCGACCCATTTGAAATGCACGCACAAACAAGGTTATTCTTCTAAAAACGACACTTCAAATGACTTCAGACTTACATATGTGGATAATATCTTGTATAACATAatttctttttagtttattttttctgtcatgTGATGTTTGTCAGTTCTGTACTTCACCATGTATTGTGTTCCATATAAGTAGCTTGTACAGTACTGGAGATTTATATATAGAAGatgtatgtaaatacatatatttatatatacagtataggaTGACAAGGGTTTGACCTGTGGGTAGTGTATAAAATGTTGATCTCATGATGTTGTTGGGCTGTAACATGCGACGAGGATGTGAACCGGCCGAACTGTACGAAACCGATTTCCCCCAGGCAGCTCGCTTGGCAGAAATCGACTAAAccctgacaaaaacaaaatctgcttaCGTTTTCACCCGTTTCTTTCCATGAACATCCTTCACCCGCATCACATGTGCAAAGACCACTTACATAGCATgtgtacaaatgtatatattttaagtcaCTCACCATTTTTTAAGagaagaacaaacacaacatgAGAATATGTGTCCCGGGAAGACTTCATTACAAGTGTCAGTTGGCTTTTCTGAACTCCTTCCCTGGGTTGTCAGActtgggtttctttttcttcctccctGCCTCTGTCATAATAAGAAAACCTCTTGTTAGAGATATCTCCTGTATGGGCAGATGTGTGTTGCCCTCCCCTGCCTTCTTATGTCTTTCTAAACACACAGGTCTCCATGTGCTCATCTCCgggtttctaaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71932 lncRNA upstream 179756 40159409 ~ 40159626 (+) True G57523
TU71839 lncRNA upstream 306049 40030546 ~ 40033333 (+) True G57457
TU71800 lncRNA upstream 396346 39941222 ~ 39943036 (+) True G57428
TU71769 lncRNA upstream 464212 39874881 ~ 39875170 (+) True G57401
TU71734 lncRNA upstream 532454 39806583 ~ 39806928 (+) True G57378
TU72028 lncRNA downstream 485691 40829072 ~ 40829677 (+) True G57597
TU72030 lncRNA downstream 589586 40932967 ~ 40933210 (+) True G57599
TU72136 lncRNA downstream 1156583 41499964 ~ 41500218 (+) True G57690
TU72199 lncRNA downstream 1252848 41596229 ~ 41599122 (+) True AMCG00009563
TU72228 lncRNA downstream 1406174 41749555 ~ 41750144 (+) True G57770
AMCG00009524 mRNA upstream 119013 40212648 ~ 40220369 (+) True AMCG00009524
AMCG00009525 mRNA upstream 136269 40189141 ~ 40203113 (+) True AMCG00009525
AMCG00009514 mRNA upstream 160332 40172966 ~ 40179050 (+) True AMCG00009514
AMCG00009515 mRNA upstream 197102 40140469 ~ 40142280 (+) True AMCG00009515
AMCG00009516 mRNA upstream 234330 40086474 ~ 40105052 (+) True AMCG00009516
AMCG00009530 mRNA downstream 68832 40412213 ~ 40420872 (+) True AMCG00009530
AMCG00009529 mRNA downstream 92946 40436327 ~ 40441597 (+) True AMCG00009529
AMCG00009526 mRNA downstream 105438 40448819 ~ 40462899 (+) True AMCG00009526
AMCG00009533 mRNA downstream 263755 40607136 ~ 40608113 (+) True AMCG00009533
AMCG00009534 mRNA downstream 301013 40644394 ~ 40652818 (+) True AMCG00009534
TU71881 other upstream 234434 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 390182 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 902387 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 1881790 38442255 ~ 38457592 (+) True G57105
TU71113 other upstream 2723099 37610343 ~ 37616283 (+) False AMCG00009428
TU72035 other downstream 647421 40990802 ~ 40994659 (+) True G57604
TU72303 other downstream 1692637 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 3589571 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 4043116 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 4223984 44567365 ~ 44570531 (+) True AMCG00009694

Expression Profile