RNA id: TU71955


Basic Information

Item Value
RNA id TU71955
length 4133
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G57545
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40339347 ~ 40343479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atccaacacacacacacacacacacacacacacacacacacacacagcgccaGACTCACGCTGGCTAATTGGAGGCTAGAAGTCCTTATTTcacctgattttattttagaaacccGGAGATGAGCACATGGAGACCTGTGTGTTTAGAAAGACATAAGAAGGCAGGGGAGGGCAACACACATCTGCCCATACAGGAGATATCTCTAACAAGAGGTTTTCTTATTATGACAGAGGCagggaggaagaaaaagaaacccaagTCTGACAACCCAGGGAAGGAGTTCAGAAAAGCCAACTGACACTTGTAATGAAGTCTTCCCGGGACACATATTCTcatgttgtgtttgttcttctCTTAAAAAATGGTGAGtgacttaaaatatatacatttgtacacATGCTATGTAAGTGGTCTTTGCACATGTGATGCGGGTGAAGGATGTTCATGGAAAGAAACGGGTGAAAACGtaagcagattttgtttttgtcagggTTTAGTCGATTTCTGCCAAGCGAGCTGCCTGGGGGAAATCGGTTTCGTACAGTTCGGCCGGTTCACATCCTCGTCGCATGTTACAGCCCAACAACATCATGAGATCAACATTTTATACACTACCCACAGGTCAAACCCTTGTCAtcctatactgtatatataaatatatgtatttacatacatCTTCTATATATAAATCTCCAGTACTGTACAAGCTACTTATATGGAACACAATACATGGTGAAGTACAGAACTGACAAACATCAcatgacagaaaaaataaactaaaaagaaatTATGTTATACAAGATATTATCCACATATGTAAGTCTGAAGTCATTTGAAGTGTCGTTTTTAGAAGAATAACCTTGTTTGTGCGTGCATTTCAAATGGGTCGGGGTGTAAACCCCACAAAGCTCGCCGCAAAGCCTGGCAGCATTACATggcacagtttaaaaaaaaagcaggagGCATGTTACACGCATGAACATAGGATtacaaactccaaactgtttACACAGATTAAGAGAACAAGTTaggaaatataatgaaatactgtaaaacacaaacaaacaaaaaaaacatggaaaacaccagttcatataaaatacatataatctgAAAGGCTATAGTGATAAAAAAACAACGTTTAAGGATACGTGAtgctttgatttttaaatattgttgtttgtgtggagaaaaaagcaaaaatacgTGCTTATTGTGTTTCGAAGGGCGTAGAATTCTGCTGCAAGTGTTTATGACTGTAGATTCAGGCCACCGTTCAGACTTGCATTCTTTCAATATATTGCTCttggaaaacaggagaaagcACTGGAGAGAGTTTGCATTGTGACTCCTGCGTGATCATAGTTTATTTCTGTAGAGAAGGCATGAGACTGGTCTGATATTGATCTTGGGTTTCATGCCTGTTAATGTGTGGTTTGATCTGCAGGGGAGGTGCGGACGCTGCCACGTGTGGCTCAGAGAAAAACACCCACTGAGTccttatgtatttgtgttgcacTTCACTTCTGTCCTACACTGGCCAGCGCCATGCCCAATGCACTGCCTCAAAACCAGTCACTGGCAAGCAAGACATGGTCATTGCAGAATACTCTGGAAGTCCCTGATGTGCTCCTGAAATACGTCCCCGACATATTATTCCCCCACAGCTATCAGGATGATGAAATTTAATGAAAAGACTTTACACTTTTCATTTGTGGGGAAAAACAACCGAATTTCTATACTGCGAGATGCTGACTCAGATTACAGAAAGAAGAAAGTAACTAGACTGAATTAAGTatgaaaaattaagaaatgggaaaaaaagggaaacataaACCAGCCCCGTACAACCAAGTGAGTAATTAATCATAGCAGCAGTAAAGTGAAGACCGTGTGAGTATAGCAAAGGCAAAATGtgtaaagaaatagaaaaagcacagcaaaatATAGGGAAAACTAGGGGAATTCAAAACGACgggaaagacacacacacggaTTTCAAGCAATGGGCATTTCAAGAAAAACGCTGGCATAAACATCGGCCAGCCACCCCAGTGCCAAGCTACACACTCTATTATTTGTATATCTGGTATATAGGGATGTACCGGAGCTCCAGCCTATTTAAACTACTTTTTTTGCCAAGCAAAGTGGGAATCTTACAGTGACCGTTCCGCAGATCGCGGTTTGGGAAAGGTGCATTTCTGTCGCCTTTGTGCCCTGCGAGCTGTCAGTCACGGCTTCCTGTTTGTTCTGAGCCTGGTGACTTGCTTGGCATTTTGGCGTATCTGCACCTGACTGTTCACTCCCCGTAGGCTCTCTCTACCCACAAAGTGCCATTGTGCCGATGCGTCAGTGTGCATTCAGCGACGATAACAAGAAAGAAAGTCAGACCACAAAGAAGACACATTTGCATGATAAAAAGACATCAAGTGTATAGAAAGGGTTTGACCTTAGGTGGAAAATGTCTCTCAAAAGCTGTTTAGGAGAGATTGTACCAGAGCCCAGTGTCCTTATAATCACAGTACACTTGGCACTGATTAAGCAATAGTTTGAATAAATTCTGATGCTTAGTTGAAGTGAAATGGTGTTTGTGGGTTTTGTCAGCAGGACAATCATtcccatttcatttattttacctaAGTTTATTAGGTAGTTGGAAACAGTGACACTACTTCTGAATTGTGAATATACTACGATATAAGATGGTTGCCATTAGTTTCATAGCGATCTATGGAACCCGACTAAGAAAAGCATTTCCAGCCACGTTCACTGATTTTGCCACAGATCTCTGTGCTTTGATAGGCCACCCTGTGCCACCACATTGTAAGTTAAAGGGGGCCTAGGAGCACCACAAGTAATACTGTTGTGTAATCCTGTTCACGTTTTGTTAATATGTTGTACAGACGAAAAGGCAAAGCATTAACACAACTGCAACTCTATCTCTAAATGGAGATCGTTTGTGAGATTGTTGGAGGAGATTTGAGAGCAGATTCCTAAGCTGTAGGCTCTCAAAGTATACAAATGATGATGCATCTATTTTTCTATCGGTGCGCTAGTGACACACCCCTCGATGGATGCTGAGAGATTACAACAAGAGGGGTGTTTGGTATAGGGCAACAGCTTTGCCGTGGCATTGCCCGGTGAAGCAAAACAGTGCCATGCTGTGACTGGATGCAAACTAGAAAAAATCAGATGGAAAATGGGGCAGCACCGGAGAGGGACACTGTCTTTGTGGGTTAATCCTCCACTGTTAAAAAAGGGGGTTGACAGTAAAGCAAGGGAGATACCATTACGACAGGAGAGTTACTCTGCCTGGTCATATTGAAGTGCGCGCTGAAGGGGATAGAGAGGGGTGTAGATGTGCACGGGGGTGATTTGGCTGCCACCTGGTTGCCCTTAATCTTAAATGTATGCAAGTCATCACTTAAAGGGGAATctaaagtgcaaaaatgcattcaaaccCTAGAAGTAAAAgagcatatttaaaaagaaactcaaACTGGAGGCCTCTATCAACAGATTTCTGTTCACCCTCCTGTCAGTGGTCTCTGTATCTCACCATCTCGGAAACAGctcaaaactaaaattaaaatgctgtacCAAGCCTTGCTGAAGTGGAAAACTGTTTCCATCTAGTAGCAGCAGTGAAGGAGACTTTAAGGTTTAAGCATATGGCGGGAGTATCCAAAGCTTGTATTGTGGAAGGCTTATCTTTTATAGATATATGAGGGATCTCATTAGCCTGaaacagaacaatacaaaatacagaacaacCTATAATCGAATCAACCAGTTCTCTTCCCATACAAGCAGCCAGTGCCAAGGGCCGGGCCTCGGGTGTTGTTGAGAGGCTGTGGTGACGGAGCGACGGAGCAACAGGGCGGTCCGACCAGGAAGCACTTTGGATTTGGAATAAGGGATTACAGCAGCTCGAGCGTACATGAAGAGAAGATGCCTTTctctgtggtttttattttttctcctagAAGGCCCCTGTTTCCAAGCGAATGCAGAGCAGCCTGAGAAGCAGCAggttaaatgaaagaaaaaaagacagccTTGTTGAGCTGGCACACCTCCATATGATCAGAGTCCAAAGgccacccacacccacacccccacccccacccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU71933 lncRNA downstream 179739 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 465118 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 532420 39806635 ~ 39806927 (-) True G57379
TU71703 lncRNA downstream 750436 39588686 ~ 39588911 (-) True G57354
TU71700 lncRNA downstream 751273 39580611 ~ 39588074 (-) True G57351
TU72026 lncRNA upstream 377952 40721431 ~ 40777084 (-) True G57596
TU72031 lncRNA upstream 589486 40932965 ~ 40933210 (-) True G57600
TU72239 lncRNA upstream 1471122 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 1697720 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 1829779 42173258 ~ 42175707 (-) True G57858
AMCG00009520 mRNA downstream 159112 40178486 ~ 40180235 (-) True AMCG00009520
AMCG00009518 mRNA downstream 171846 40160222 ~ 40167501 (-) True AMCG00009518
AMCG00009521 mRNA downstream 181899 40121463 ~ 40157448 (-) True AMCG00009521
AMCG00009517 mRNA downstream 220619 40106123 ~ 40118728 (-) True AMCG00009517
AMCG00009522 mRNA downstream 271098 40052151 ~ 40068249 (-) True AMCG00009522
AMCG00009528 mRNA upstream 114328 40457807 ~ 40472602 (-) True AMCG00009528
AMCG00009527 mRNA upstream 129157 40472636 ~ 40480067 (-) True AMCG00009527
AMCG00009531 mRNA upstream 138197 40481676 ~ 40493252 (-) True AMCG00009531
AMCG00009532 mRNA upstream 151720 40495199 ~ 40495887 (-) True AMCG00009532
AMCG00009537 mRNA upstream 416416 40759895 ~ 40833267 (-) True AMCG00009537
TU71924 other downstream 181876 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 1501783 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 1756527 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 3119271 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 4466750 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 2325648 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 3138942 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3646032 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 4164774 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 4198415 44541894 ~ 44542809 (-) True G58584

Expression Profile