RNA id: TU72031


Basic Information

Item Value
RNA id TU72031
length 246
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G57600
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40932965 ~ 40933210 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGatcagctgggaccatagtcaccaagaaaacaattggtaacacactacgcactactcctgcagcgcccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtctgaagtttgccgatgaacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgagaccaaaatcgagctctttggcatcaactcaactcgccgtgtttggaggaggaggaatgaccccag

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72026 lncRNA downstream 155881 40721431 ~ 40777084 (-) True G57596
TU71955 lncRNA downstream 589486 40339347 ~ 40343479 (-) True G57545
TU71933 lncRNA downstream 773357 40159397 ~ 40159608 (-) True G57524
TU71768 lncRNA downstream 1058736 39873971 ~ 39874229 (-) True G57400
TU71735 lncRNA downstream 1126038 39806635 ~ 39806927 (-) True G57379
TU72239 lncRNA upstream 881391 41814601 ~ 41815807 (-) False AMCG00009571
TU72308 lncRNA upstream 1107989 42041199 ~ 42056128 (-) False AMCG00009582
TU72332 lncRNA upstream 1240048 42173258 ~ 42175707 (-) True G57858
TU72348 lncRNA upstream 1272060 42205270 ~ 42205559 (-) True G57873
TU72494 lncRNA upstream 1534975 42468185 ~ 42468759 (-) True G57982
AMCG00009538 mRNA downstream 81399 40833364 ~ 40851566 (-) True AMCG00009538
AMCG00009537 mRNA downstream 99698 40759895 ~ 40833267 (-) True AMCG00009537
AMCG00009532 mRNA downstream 437078 40495199 ~ 40495887 (-) True AMCG00009532
AMCG00009531 mRNA downstream 439713 40481676 ~ 40493252 (-) True AMCG00009531
AMCG00009527 mRNA downstream 452898 40472636 ~ 40480067 (-) True AMCG00009527
AMCG00009540 mRNA upstream 59237 40992447 ~ 40994537 (-) True AMCG00009540
AMCG00009546 mRNA upstream 201104 41134314 ~ 41137031 (-) True AMCG00009546
AMCG00009547 mRNA upstream 207230 41140440 ~ 41155910 (-) True AMCG00009547
AMCG00009548 mRNA upstream 226689 41159899 ~ 41167236 (-) True AMCG00009548
AMCG00009545 mRNA upstream 238104 41171314 ~ 41175326 (-) True AMCG00009545
TU71924 other downstream 775494 40148725 ~ 40157471 (-) False AMCG00009521
TU71520 other downstream 2095401 38835316 ~ 38837564 (-) False AMCG00009472
TU71449 other downstream 2350145 38580285 ~ 38582820 (-) True G57155
TU70990 other downstream 3712889 37215960 ~ 37220076 (-) True G56800
TU70712 other downstream 5060368 35872123 ~ 35872597 (-) True G56568
TU72548 other upstream 1735917 42669127 ~ 42673707 (-) True G58025
TU72928 other upstream 2549211 43482421 ~ 43945297 (-) True G58333
TU73015 other upstream 3056301 43989511 ~ 43995654 (-) True AMCG00009672
TU73231 other upstream 3575043 44508253 ~ 44512249 (-) False AMCG00009697
TU73235 other upstream 3608684 44541894 ~ 44542809 (-) True G58584

Expression Profile