RNA id: TU72233


Basic Information

Item Value
RNA id TU72233
length 1561
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G57775
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41815921 ~ 41817795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttttaacattttattgtggACCGTAAACCATACTGAGGCAGTGCAAACTAAAGCCGGTTTGCATAACATGGGAGGATAAGGATCTCTCACACAGCATTGAATTagcaacacaaaataacatAGTAAATGTACTGGAAcagttaacattaaaataaaaactctccACACATGAACTGCACCCATCCATACGCTTGACTAAACCGGTCTGTGATCACCAAACTACAGAGAGAAATTCGCAGGATTTTGTCACAAGTCTGAAAAACTGATGGACAGCAGTAGTGTAGGTTTACTGGAGAGGAATAGGTATTTGCCTGTATGCAAGCAGTTTAATAATCATGCATTCCTGTAGAAGGGTATACTCCCAGCTTGCTTAAGGAACAAATGCTTACTCATTTGTCTAGCAGCCAAAAaggcagaacaaaaaaaaatccaaaaccGAAGCAGTGATAATGTAAGTGCACTCACTACCCAAGCAGTACAAATCACACTACTGCAATGTTCCCAATGTTCTGAACTAGCAAATCCATTCCCGACTACAAGCAGTGAGCATTTTTTACTTGGAACTTATGAAAACACCTTTAAACTGATCGGGTCACGAACAGTCTAGCAACAATCATTTAAGACCATCATTTCCCTAGAGGAGGAAATGAGTCGAGCTTTCTCGAGAACCACGGTCACACACTAGGACCGCTAAATAATCTGGAGACAGAAATCCAAAGATTTTAAGACTCGACACTGTCCCCTTCTGTACAGGCATAAATCACAGCAGACACCTGAAAGTATGGACAGACTTCTCTGGAAAATAATCAAAGTACACTAGAGCTTTGAAATGGATGAAGAAACAAGATTAATCCAAGCGCAACCAGAAGCAATGGGCTAAAGATTATAGAAGAGAGAGACAACTGCAACCACTGCAAGGAATGCATTACCAAGTCTAGCTGCCTTGTTTTGGAATGGGACAACCGAAATGTGCGAGATAAGCGAGAAACCCGAATCTGGGCATCCAAATTCATTAGTCCCACTTCTCATTTTGCACAAATCTCTGCCCTTTGCCAATAAAGGGATTTACTCTGATCAAGaagctgcagagagatcaatgAAGTGGTTGACTTTACAGAAAAGCTTCCTCACACTGTACAGGGtttggagagagaagagggggggGGAATGACTCTATGTAATCTTTATTATGAATGGAATGTGCTTTACACAAGTGTGGTCAGAAGGGGAACAGACTCCtgtacacattacatttcaaggGACAGATGcctaaagttttgatttggagAGGGCCGTGAAAACCAGCACTGAAGGGGATAGGTGGAATTTCCGCTCCTCAGTTAGCGAAGGTCGACCGGACGGCCGCGACAATGCACTTGGCGCTGATGCCATACAGGTCGAGGAGCTCGGTGGGCTTGCCGCTGCGGGGGACTTGTGTCACCGCCAGCATCTGCACGAGAATATCAGGCTCCTCAGCCACCGCGCTGCACACCGCCTCCCCAAGGCCACCTCTTTGTAGTGGTCCTCCACCGTGATGATTCGGCCTCCGGTAGCTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72228 lncRNA upstream 65777 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 216799 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 315703 41499964 ~ 41500218 (+) True G57690
TU72030 lncRNA upstream 882711 40932967 ~ 40933210 (+) True G57599
TU72028 lncRNA upstream 986244 40829072 ~ 40829677 (+) True G57597
TU72251 lncRNA downstream 21370 41839165 ~ 41839466 (+) True G57792
TU72317 lncRNA downstream 267484 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 584440 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 597795 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 600346 42418141 ~ 42418505 (+) True G57946
AMCG00009568 mRNA upstream 31384 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009564 mRNA upstream 132226 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009563 mRNA upstream 216797 41596308 ~ 41599124 (+) False AMCG00009563
AMCG00009556 mRNA upstream 227167 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009562 mRNA upstream 247089 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009569 mRNA downstream 15076 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009575 mRNA downstream 84038 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009577 mRNA downstream 133872 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009579 mRNA downstream 161742 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009578 mRNA downstream 218223 42036018 ~ 42042211 (+) True AMCG00009578
TU72035 other upstream 821262 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1710973 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1866721 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2378926 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3358329 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 218223 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2115157 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2568702 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2749570 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2766767 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile