RNA id: TU72251



Basic Information


Item Value
RNA id TU72251
length 302
lncRNA type intronic
GC content 0.44
exon number 1
gene id G57792
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 41839165 ~ 41839466 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATAAAGGTGCAAGTTAAGCGGAGAACTGCTGCGCACCGACAAAGTGTGGGTAGAACAGGCAGTGGTACAGGGTTCGATGAACTTACACCCTTTGAGCAGAGAGTTGCCTCTATCATGGGTGTCACTTTACTCTCTGGAATAGTATCTGATGCTGTGGGAGACTCGGATTTACTACAGGACTGCCACAAAGGTAACTCATTTCCCATTTGTTTGCTTAACTGTGGTACACATAGCTTACCAGCCTGCATTTAATTATCAAATGCATGCAATGTAGCTGACCAAAAGTACACCAGAGATTTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72233 lncRNA upstream 21370 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 89021 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 240043 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 338947 41499964 ~ 41500218 (+) True G57690
TU72030 lncRNA upstream 905955 40932967 ~ 40933210 (+) True G57599
TU72317 lncRNA downstream 245813 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 562769 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 576124 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 578675 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 579124 42418590 ~ 42420823 (+) True G57947
AMCG00009568 mRNA upstream 54628 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009564 mRNA upstream 155470 41678552 ~ 41683695 (+) True AMCG00009564
AMCG00009563 mRNA upstream 240041 41596308 ~ 41599124 (+) False AMCG00009563
AMCG00009556 mRNA upstream 250411 41586666 ~ 41588754 (+) True AMCG00009556
AMCG00009562 mRNA upstream 270333 41560388 ~ 41568832 (+) True AMCG00009562
AMCG00009575 mRNA downstream 62367 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009577 mRNA downstream 112201 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009579 mRNA downstream 140071 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009578 mRNA downstream 196552 42036018 ~ 42042211 (+) True AMCG00009578
AMCG00009581 mRNA downstream 236012 42075478 ~ 42078291 (+) True AMCG00009581
TU72035 other upstream 844506 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1734217 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 1889965 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2402170 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3381573 38442255 ~ 38457592 (+) True G57105
TU72303 other downstream 196552 42036018 ~ 42078241 (+) True G57830
TU72919 other downstream 2093486 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2547031 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2727899 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2745096 44584562 ~ 44599328 (+) False AMCG00009700

Expression Profile