RNA id: TU72303



Basic Information


Item Value
RNA id TU72303
length 386
RNA type TUCP
GC content 0.54
exon number 5
gene id G57830
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42036018 ~ 42078241 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGGAAGGCGGGCCTTGTCAGTCACTGCTAACGAAGATGGCGGGTGGTTTGAAAGAGAAACAACTTTCTCAGAGAGTTTACGAGTCTTTGCAGTGTATGTCCGTCACTGAGTAAAAAAATCCTGGTTCTTGCTTCGACACAGACAGACGCTCTAATCCAAGAAATGGCAAAGCTGGGGTTTGAGATGATGCTGTGTCGACCAGATGACACCGATTTGATCAAGGGCTCGGCCACGCCCCTCCGCCAGCTTGTTTTCTTGGACCAGCTCCTCACTTTAGTCCCTGGTCCGCAGGCCGAGAAGGCCTCTGGgaactcctcctcctcctcatcttctGTGGGAGATCTGTCCCTCTCTGAAGAGGTGACCAGGACCGAGGAGCTGCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU72251 lncRNA upstream 196552 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 218223 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 285874 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 436896 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 535800 41499964 ~ 41500218 (+) True G57690
TU72317 lncRNA downstream 7038 42085279 ~ 42088145 (+) True G57843
TU72439 lncRNA downstream 323994 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 337349 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 339900 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 340349 42418590 ~ 42420823 (+) True G57947
AMCG00009579 mRNA upstream 6054 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009577 mRNA upstream 75109 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009575 mRNA upstream 125900 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009569 mRNA upstream 191561 41832871 ~ 41844457 (+) True AMCG00009569
AMCG00009568 mRNA upstream 251481 41775209 ~ 41784537 (+) True AMCG00009568
AMCG00009580 mRNA downstream 92105 42170346 ~ 42175700 (+) True AMCG00009580
AMCG00009588 mRNA downstream 115053 42193294 ~ 42211548 (+) True AMCG00009588
AMCG00009587 mRNA downstream 135363 42213604 ~ 42224519 (+) True AMCG00009587
AMCG00009586 mRNA downstream 188581 42266822 ~ 42271197 (+) True AMCG00009586
AMCG00009593 mRNA downstream 197758 42275999 ~ 42280429 (+) True AMCG00009593
TU72035 other upstream 1041359 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1931070 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2086818 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2599023 39434900 ~ 39436995 (+) True AMCG00009480
TU71381 other upstream 3578426 38442255 ~ 38457592 (+) True G57105
TU72919 other downstream 1854711 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2308256 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2489124 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2506321 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2554509 44632750 ~ 44651967 (+) True G58600

Expression Profile