RNA id: TU72317


Basic Information

Item Value
RNA id TU72317
length 2836
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G57843
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 42085279 ~ 42088145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAAGAATACACAGTaaaggattaatttaattaaacttttaatgCAATTTCCAAGACAAGCAGAGCCTCGTGTGAGCTCATCAAGGTCGCCGGAGACACAAGAACCCTGTTCTTGAAAGAGGGTGATCATGGGAGAAATGGTTTGTGGTTTGCTTCTAATGATCCAACTCTGGGACTTTGGTGGCTACAGTGCCTTCTAGTTTCCCCTCCAGATGTAAAATAGTTGGCCTGAATATCTGTTTCAATGAACCAGTGTTTAACCATTTGCCCAGATCTTGAAGGGGTACTGAACACTAAATAATACTGGTATGAATAAGTGCTCTGTTTCCTTACCATTAATATCCTGAGACATGTGGTTCCTTTCTCACACTCGGTAGGTCAGTGTttgatatgaaaaatgtaaaaagctgCTACACAGGGGGAGGATCCAGCAAAGGTGCCCGTGACAAGCTATGTGGCCTTCTCCAGAAGATGCTCCCTGTTTTTATTGGTCCTCTGTCAGACATTTACAAGGTCATTACATGTAGGTAAAACATGTGGAGTATCCAAAGCGAAGCACAAACCTGCTCTTAAGGGTTTTGGGACACCTTTTGTGCCTCCAGTACAACACCTACAGATGAACTAAACAGAGCCCTTTCACACCATTGAAAATACCAAAATGGCATCACAAAATGGCTAAAGCTGGTTTATGCCCCTACTTTGATTTGTCCAAGCAATTGTGCTCTGAAAGACTGTAGTTGTCCTCTACACCCCAGGACAACGTGATAAAATTGAAACAATCGGCCAAGACAAGAGCATGATTCTAAACTCATGTGACTGTTAAGACATTAAAGTCGGTATGTAATTGAGCTACACAATGAATGGTGGAGATTAAAGCCTTTTTTATAGAATGTATAGAAATAGCACttaaacataaaagaaaaacaaacaggcaatgctatttttaaaaagagtgcaGTAACATATTAACCCTAAGTGAAATTAACACTAACCTGGTTATGAACTCTATCAAtaatttggttttgattttagAGTTTGCTTTCCTAGCCATTGGCTGATCACAGCTCCTTCAATCCAGTTTGCATGATAACTCCAGTTGGATGGCTTCTCGATGTTAAGGTCTGTGTTTTGATGCCATTAGATGGTCTGTTCAGTGCTTGATGGCTTCTATGTGGGGAAACTTCCATTGATACTACAGCTTTGGCCATAGTTAGGGAGCTACGTTAAGGGTGCACCACAATAGGGGATTGTGCTGTTTGAACTACCCCTTCAGCATATTCTTAGTGGCACTGTCAGCATGTCCACTAAGTTACCAGTATGTCTGGACCACTTTAAGAACATCACAATAATGTTACAATAGAGAGCAAACCATTTGGacagtcttttcttttcttttggagTAGTTAGTTGCTTCTGGTGCCCTTATATAGTTGTGTCCCTTCAGaatgaaaaaagcaattaaaaggaaataaaatgttttgttttgcaaaggcAGATAGACTGAGAAGAAATAAACACTAGGGACACAGTCAGGTGTGAAGAGTGATGCTAACAGTCAGTTCTGAACCCGAACCACAGACCTACCAAAGCCATTTCACAAAAGGCAGACAGGCTCCGTCCGTTGTGGGAAAGCTTTAATGATCTCAATGGATGTCCACCATTACTCAGTCTTAGTGCCTGTACCTACAAGTGATTTTAAATGGGATCAGATCACTAGAGTTCAGAACCAATAGGAGGCAACTGGATAATCAGCTTAGCTTTCTTCCGCCACCCAAGATTTACAAAGCAGGTCTTGTCTCTTGTTATAACCCCAGTGTAATGAAAGTAAAAAGCATTTATTCTAGCCGATACTGCATTTGACAAGCAACAGACGAATAGAAATAGGCAGCCCGTAGATATAGGATAAGTGAGCATCTTTCTTCGTATACCCAGTTGAAGTGATtttcacatatacatttaaacagggGCAGGTGATACAGGTGACAGAGTTCAACACAAGCATAGACGTATATTAATGCGTATTTTAGAGCAATACACCGCCCACCTCCCCTCCCGACCCGACCCCAGCCAAAATCTGCACAAAGCCAAAACGCAGAGAATAAtcaataaatctgtttttctattttcaataGGATtttaaaaccccaaacaaatcaaaaatctACTTTTACGgcaatggatttttttttcttgttcccCACCACACAGctcaccaataataataataaaaaaaacttcaaaaataataagaataataatataataataataacaataacataacaatatgaatacaaactaacaaaacaaaaacgtttaACAAATGTCACCGCATCCAATTTTGCTTGAAAGAACAAATTTTACCAGAATCTATGTCTAATCCTCGCtgagaagtaataataataatcataattacaaaAAGCAAACTGGCAAATACACCTTTGCCAAGTTATTAGAtggaatgtatattttttcaggCCACTAAACAAAAATAGGATTATTTGGGGGGATTTGGGGTTTTTGAAGGCACGTTTCGGGGGTATAGGCTTCTTGTTATCCTGTGTCTTTCTCTCGgtttccttctccttctctctctctttctctctctctccctctttatcTGTCTCTTTCTCGCTTTTACTTCTTGTAGTTGCCGAATTGTATGGCCAGTCGGTCGTTCACGCAGCGGAATGTGGCTGGCTGCACCTCCCAGTAGTTGACAGGGTTGCTGAAGAGACTGATGCCGTTGTAGTAAGCCCGCTTCATCCCGAAGCCCACGGGGCAGAAATCGTTTGTACCGACCTGGGTGATGTTATTGGAGTGCAGGTAGACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72251 lncRNA upstream 245813 41839165 ~ 41839466 (+) True G57792
TU72233 lncRNA upstream 267484 41815921 ~ 41817795 (+) True G57775
TU72228 lncRNA upstream 335135 41749555 ~ 41750144 (+) True G57770
TU72199 lncRNA upstream 486157 41596229 ~ 41599122 (+) True AMCG00009563
TU72136 lncRNA upstream 585061 41499964 ~ 41500218 (+) True G57690
TU72439 lncRNA downstream 314090 42402235 ~ 42402452 (+) True G57940
TU72446 lncRNA downstream 327445 42415590 ~ 42418109 (+) True G57945
TU72447 lncRNA downstream 329996 42418141 ~ 42418505 (+) True G57946
TU72448 lncRNA downstream 330445 42418590 ~ 42420823 (+) True G57947
TU72449 lncRNA downstream 339697 42427842 ~ 42428048 (+) True G57948
AMCG00009581 mRNA upstream 6988 42075478 ~ 42078291 (+) True AMCG00009581
AMCG00009578 mRNA upstream 43068 42036018 ~ 42042211 (+) True AMCG00009578
AMCG00009579 mRNA upstream 55315 41979537 ~ 42029964 (+) True AMCG00009579
AMCG00009577 mRNA upstream 124370 41951667 ~ 41960909 (+) True AMCG00009577
AMCG00009575 mRNA upstream 175161 41901833 ~ 41910118 (+) True AMCG00009575
AMCG00009580 mRNA downstream 82201 42170346 ~ 42175700 (+) True AMCG00009580
AMCG00009588 mRNA downstream 105149 42193294 ~ 42211548 (+) True AMCG00009588
AMCG00009587 mRNA downstream 125459 42213604 ~ 42224519 (+) True AMCG00009587
AMCG00009586 mRNA downstream 178677 42266822 ~ 42271197 (+) True AMCG00009586
AMCG00009593 mRNA downstream 187854 42275999 ~ 42280429 (+) True AMCG00009593
TU72303 other upstream 7038 42036018 ~ 42078241 (+) True G57830
TU72035 other upstream 1090620 40990802 ~ 40994659 (+) True G57604
TU71881 other upstream 1980331 40102383 ~ 40104948 (+) False AMCG00009516
TU71802 other upstream 2136079 39948006 ~ 39949200 (+) True G57430
TU71670 other upstream 2648284 39434900 ~ 39436995 (+) True AMCG00009480
TU72919 other downstream 1844807 43932952 ~ 43935762 (+) True G58324
TU73161 other downstream 2298352 44386497 ~ 44387964 (+) False G58522
TU73232 other downstream 2479220 44567365 ~ 44570531 (+) True AMCG00009694
TU73244 other downstream 2496417 44584562 ~ 44599328 (+) False AMCG00009700
TU73251 other downstream 2544605 44632750 ~ 44651967 (+) True G58600

Expression Profile